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1V47
Asym. Unit
Info
Asym.Unit (119 KB)
Biol.Unit 1 (115 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ATP SULFURYLASE FROM THERMUS THERMOPHILLUS HB8 IN COMPLEX WITH APS
Authors
:
Y. Taguchi, M. Sugishima, K. Fukuyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
11 Nov 03 (Deposition) - 06 Apr 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.49
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Product Binding Complex, Zinc, Riken Structural Genomics/Proteomics Initiative, Rsgi, Structural Genomics, Transferase
(Keyword Search:
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)
Reference
:
Y. Taguchi, M. Sugishima, K. Fukuyama
Crystal Structure Of A Novel Zinc-Binding Atp Sulfurylase From Thermus Thermophilus Hb8
Biochemistry V. 43 4111 2004
(for further references see the
PDB file header
)
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Hetero Components
(4, 13)
Info
All Hetero Components
1a: ADENOSINE-5'-PHOSPHOSULFATE (ADXa)
1b: ADENOSINE-5'-PHOSPHOSULFATE (ADXb)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
3c: SODIUM ION (NAc)
3d: SODIUM ION (NAd)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ADX
2
Ligand/Ion
ADENOSINE-5'-PHOSPHOSULFATE
2
CL
5
Ligand/Ion
CHLORIDE ION
3
NA
4
Ligand/Ion
SODIUM ION
4
ZN
2
Ligand/Ion
ZINC ION
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:294 , CYS A:297 , CYS A:306 , HIS A:310
BINDING SITE FOR RESIDUE ZN A 601
02
AC2
SOFTWARE
CYS B:294 , CYS B:297 , CYS B:306 , HIS B:310
BINDING SITE FOR RESIDUE ZN B 602
03
AC3
SOFTWARE
ARG A:164 , LYS A:195 , GLY A:263
BINDING SITE FOR RESIDUE CL A 602
04
AC4
SOFTWARE
THR A:109
BINDING SITE FOR RESIDUE NA A 603
05
AC5
SOFTWARE
GLU A:96
BINDING SITE FOR RESIDUE NA A 604
06
AC6
SOFTWARE
GLU A:219
BINDING SITE FOR RESIDUE NA A 605
07
AC7
SOFTWARE
HOH A:726
BINDING SITE FOR RESIDUE CL A 606
08
AC8
SOFTWARE
ARG A:277
BINDING SITE FOR RESIDUE CL A 608
09
AC9
SOFTWARE
PHE A:161 , GLN A:162 , THR A:163 , ARG A:164 , ASN A:165 , HIS A:168 , ALA A:170 , HIS A:171 , MET A:230 , GLY A:256 , ARG A:257 , HIS A:259 , ALA A:260 , GLY A:289 , VAL A:291 , ILE A:317 , HOH A:609
BINDING SITE FOR RESIDUE ADX A 564
10
BC1
SOFTWARE
PHE B:161 , GLN B:162 , THR B:163 , ARG B:164 , HIS B:168 , ALA B:170 , HIS B:171 , LEU B:174 , MET B:230 , GLY B:256 , ARG B:257 , HIS B:259 , ALA B:260 , GLY B:289 , VAL B:291 , ILE B:317
BINDING SITE FOR RESIDUE ADX B 574
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1v47a1 (A:4-135)
1b: SCOP_d1v47b1 (B:4-135)
2a: SCOP_d1v47a2 (A:136-349)
2b: SCOP_d1v47b2 (B:136-347)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
PUA domain-like
(96)
Superfamily
:
PUA domain-like
(96)
Family
:
ATP sulfurylase N-terminal domain
(15)
Protein domain
:
ATP sulfurylase N-terminal domain
(15)
Thermus thermophilus [TaxId: 274]
(1)
1a
d1v47a1
A:4-135
1b
d1v47b1
B:4-135
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Adenine nucleotide alpha hydrolase-like
(440)
Superfamily
:
Nucleotidylyl transferase
(325)
Family
:
ATP sulfurylase catalytic domain
(16)
Protein domain
:
ATP sulfurylase catalytic domain
(15)
Thermus thermophilus [TaxId: 274]
(1)
2a
d1v47a2
A:136-349
2b
d1v47b2
B:136-347
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1v47B02 (B:137-347)
1b: CATH_1v47A02 (A:137-349)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1
(328)
Thermus thermophilus. Organism_taxid: 274.
(11)
1a
1v47B02
B:137-347
1b
1v47A02
A:137-349
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_ATP_sulfurylase_1v47B01 (B:137-347)
1b: PFAM_ATP_sulfurylase_1v47B02 (B:137-347)
2a: PFAM_PUA_2_1v47B03 (B:4-133)
2b: PFAM_PUA_2_1v47B04 (B:4-133)
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Clan
:
HUP
(230)
Family
:
ATP-sulfurylase
(9)
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
(1)
1a
ATP-sulfurylase-1v47B01
B:137-347
1b
ATP-sulfurylase-1v47B02
B:137-347
Clan
:
PUA
(42)
Family
:
PUA_2
(11)
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
(1)
2a
PUA_2-1v47B03
B:4-133
2b
PUA_2-1v47B04
B:4-133
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Asymmetric Unit 1
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Asym.Unit (119 KB)
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