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1V3C
Biol. Unit 1
Info
Asym.Unit (167 KB)
Biol.Unit 1 (160 KB)
Biol.Unit 2 (624 KB)
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(1)
Title
:
STRUCTURE OF THE HEMAGGLUTININ-NEURAMINIDASE FROM HUMAN PARAINFLUENZA VIRUS TYPE III: COMPLEX WITH NEU5AC
Authors
:
M. C. Lawrence, N. A. Borg, V. A. Streltsov, P. A. Pilling, V. C. Epa, J. N. J. L. Mckimm-Breschkin, P. M. Colman
Date
:
30 Oct 03 (Deposition) - 03 Feb 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (4x)
Keywords
:
Piv3 Hn, Native+Neu5Ac, Hexagonal, Hydrolase
(Keyword Search:
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Reference
:
M. C. Lawrence, N. A. Borg, V. A. Streltsov, P. A. Pilling, V. C. Epa, J. N. Varghese, J. L. Mckimm-Breschkin, P. M. Colman
Structure Of The Haemagglutinin-Neuraminidase From Human Parainfluenza Virus Type Iii
J. Mol. Biol. V. 335 1343 2004
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Hetero Components
(4, 13)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
2f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
4a: 5-N-ACETYL-BETA-D-NEURAMINIC ACID (SLBa)
4b: 5-N-ACETYL-BETA-D-NEURAMINIC ACID (SLBb)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
NAG
6
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
3
NDG
1
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
4
SLB
2
Ligand/Ion
5-N-ACETYL-BETA-D-NEURAMINIC ACID
5
SO4
4
Ligand/Ion
SULFATE ION
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:302 , ASN A:308
BINDING SITE FOR RESIDUE NAG A 3081
02
AC2
SOFTWARE
ASN A:351 , THR A:353 , NAG A:3512 , HOH A:3566 , HOH A:3770 , HOH A:3775
BINDING SITE FOR RESIDUE NAG A 3511
03
AC3
SOFTWARE
NAG A:3511 , HOH A:3743
BINDING SITE FOR RESIDUE NAG A 3512
04
AC4
SOFTWARE
THR B:302 , ARG B:303 , ASN B:307 , ASN B:308 , HOH B:5438 , HOH B:5496 , HOH B:5570
BINDING SITE FOR RESIDUE NAG B 3081
05
AC5
SOFTWARE
ASN B:351 , THR B:353 , TRP B:451 , NAG B:3512
BINDING SITE FOR RESIDUE NDG B 3511
06
AC6
SOFTWARE
TRP B:451 , NDG B:3511
BINDING SITE FOR RESIDUE NAG B 3512
07
AC7
SOFTWARE
ASN B:523 , ARG B:524 , THR B:525 , HOH B:5262 , HOH B:5556
BINDING SITE FOR RESIDUE NAG B 5231
08
AC8
SOFTWARE
ARG A:192 , GLU A:276 , TYR A:319 , TYR A:337 , GLU A:409 , ARG A:424 , ARG A:502 , TYR A:530 , SO4 A:3004 , HOH A:3571 , HOH A:3576 , HOH A:3586 , HOH A:3609 , HOH A:3615 , HOH A:3672 , HOH A:3706 , HOH A:3745 , HOH A:3750 , HOH A:3832 , HOH A:3906
BINDING SITE FOR RESIDUE SLB A 3215
09
AC9
SOFTWARE
ARG B:192 , GLU B:276 , TYR B:319 , TYR B:337 , GLU B:409 , ARG B:424 , ARG B:502 , TYR B:530 , HOH B:5260 , HOH B:5291 , HOH B:5297 , HOH B:5298 , HOH B:5452 , HOH B:5500 , HOH B:5519 , HOH B:5609 , HOH B:5668
BINDING SITE FOR RESIDUE SLB B 4215
10
BC1
SOFTWARE
ASP A:279 , SER A:282 , GLY A:284 , ALA A:316
BINDING SITE FOR RESIDUE CA A 1001
11
BC2
SOFTWARE
ASP B:279 , SER B:282 , GLY B:284 , ALA B:316 , HOH B:5285
BINDING SITE FOR RESIDUE CA B 2001
12
BC3
SOFTWARE
ASN B:485 , THR B:487 , SER B:489 , HOH B:5256 , HOH B:5474
BINDING SITE FOR RESIDUE SO4 B 3001
13
BC4
SOFTWARE
THR A:487 , SER A:489 , HOH A:3517 , HOH A:3628
BINDING SITE FOR RESIDUE SO4 A 3002
14
BC5
SOFTWARE
HIS A:245 , THR A:246 , ASN B:232 , SER B:233 , HOH B:5296 , HOH B:5400
BINDING SITE FOR RESIDUE SO4 B 3003
15
BC6
SOFTWARE
ARG A:192 , CYS A:214 , GLN A:215 , SLB A:3215 , HOH A:3832 , HOH A:3907
BINDING SITE FOR RESIDUE SO4 A 3004
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1v3ca_ (A:)
1b: SCOP_d1v3cb_ (B:)
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Class
:
All beta proteins
(24004)
Fold
:
6-bladed beta-propeller
(327)
Superfamily
:
Sialidases
(238)
Family
:
Sialidases (neuraminidases)
(178)
Protein domain
:
Hemagglutinin-neuraminidase glycoprotein
(5)
Human parainfluenza virus type 3 [TaxId: 11216]
(5)
1a
d1v3ca_
A:
1b
d1v3cb_
B:
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CATH Domains
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (167 KB)
Header - Asym.Unit
Biol.Unit 1 (160 KB)
Header - Biol.Unit 1
Biol.Unit 2 (624 KB)
Header - Biol.Unit 2
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