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1V1J
Biol. Unit 1
Info
Asym.Unit (299 KB)
Biol.Unit 1 (292 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF TYPE II DEHYDROQUINTAE DEHYDRATASE FROM STREPTOMYCES COELICOLOR IN COMPLEX WITH 3-FLUORO
Authors
:
A. W. Roszak, J. R. Coggins, A. J. Lapthorn
Date
:
16 Apr 04 (Deposition) - 26 Jan 05 (Release) - 28 Jun 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L (1x)
Keywords
:
Dhq, Shikimate, Dehydroquinase, Aromatic Amino Acid Biosynthesis, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Frederickson, A. W. Roszak, J. R. Coggins, A. J. Lapthorn, C. Abell
(1R, 4S, 5R)-3-Fluoro-1, 4, 5-Trihydroxy-2-Cyclohexene-1-Carboxylic Acid: The Fluoro Analogue Of The Enolate Intermediate In The Reaction Catalyzed By Type Ii Dehydroquinases
Org. Biomol. Chem. V. 2 1592 2004
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Hetero Components
(2, 16)
Info
All Hetero Components
1a: 2-ANHYDRO-3-FLUORO-QUINIC ACID (FA3a)
1b: 2-ANHYDRO-3-FLUORO-QUINIC ACID (FA3b)
1c: 2-ANHYDRO-3-FLUORO-QUINIC ACID (FA3c)
1d: 2-ANHYDRO-3-FLUORO-QUINIC ACID (FA3d)
1e: 2-ANHYDRO-3-FLUORO-QUINIC ACID (FA3e)
1f: 2-ANHYDRO-3-FLUORO-QUINIC ACID (FA3f)
1g: 2-ANHYDRO-3-FLUORO-QUINIC ACID (FA3g)
1h: 2-ANHYDRO-3-FLUORO-QUINIC ACID (FA3h)
1i: 2-ANHYDRO-3-FLUORO-QUINIC ACID (FA3i)
1j: 2-ANHYDRO-3-FLUORO-QUINIC ACID (FA3j)
1k: 2-ANHYDRO-3-FLUORO-QUINIC ACID (FA3k)
1l: 2-ANHYDRO-3-FLUORO-QUINIC ACID (FA3l)
2a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
2b: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSb)
2c: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSc)
2d: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FA3
12
Ligand/Ion
2-ANHYDRO-3-FLUORO-QUINIC ACID
2
TRS
4
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
[
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]
Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:28 , ASN A:79 , ALA A:81 , ALA A:82 , HIS A:85 , HIS A:106 , ILE A:107 , SER A:108 , ARG A:117 , ASP B:92
BINDING SITE FOR RESIDUE FA3 A 201
02
AC2
SOFTWARE
GLU A:59 , THR A:86 , GLU B:59 , THR B:86 , SER B:87 , GLU C:59 , THR C:86 , SER C:87
BINDING SITE FOR RESIDUE TRS A1151
03
AC3
SOFTWARE
TYR B:28 , ASN B:79 , ALA B:81 , ALA B:82 , HIS B:85 , HIS B:106 , ILE B:107 , SER B:108 , ARG B:117 , ASP C:92
BINDING SITE FOR RESIDUE FA3 B 201
04
AC4
SOFTWARE
ASP A:92 , HOH A:2028 , TYR C:28 , ASN C:79 , ALA C:81 , ALA C:82 , HIS C:85 , HIS C:106 , ILE C:107 , SER C:108 , ARG C:117
BINDING SITE FOR RESIDUE FA3 C 201
05
AC5
SOFTWARE
TYR D:28 , ASN D:79 , ALA D:81 , ALA D:82 , HIS D:85 , HIS D:106 , ILE D:107 , SER D:108 , ARG D:117 , HOH D:2002 , ASP E:92
BINDING SITE FOR RESIDUE FA3 D 201
06
AC6
SOFTWARE
TYR E:28 , ASN E:79 , ALA E:81 , ALA E:82 , HIS E:85 , HIS E:106 , ILE E:107 , SER E:108 , ARG E:117 , ASP F:92 , HOH F:2026
BINDING SITE FOR RESIDUE FA3 E 201
07
AC7
SOFTWARE
GLU D:59 , THR D:86 , SER D:87 , GLU E:59 , THR E:86 , SER E:87 , GLU F:59 , THR F:86 , SER F:87
BINDING SITE FOR RESIDUE TRS E1151
08
AC8
SOFTWARE
ASP D:92 , TYR F:28 , ASN F:79 , ALA F:81 , ALA F:82 , HIS F:85 , HIS F:106 , ILE F:107 , SER F:108 , ARG F:117
BINDING SITE FOR RESIDUE FA3 F 201
09
AC9
SOFTWARE
TYR G:28 , ASN G:79 , ALA G:81 , ALA G:82 , HIS G:85 , HIS G:106 , ILE G:107 , SER G:108 , ARG G:117 , ASP H:92
BINDING SITE FOR RESIDUE FA3 G 201
10
BC1
SOFTWARE
TYR H:28 , ASN H:79 , ALA H:81 , ALA H:82 , HIS H:85 , HIS H:106 , ILE H:107 , SER H:108 , ARG H:117 , ASP I:92
BINDING SITE FOR RESIDUE FA3 H 201
11
BC2
SOFTWARE
ASP G:92 , TYR I:28 , ASN I:79 , ALA I:81 , ALA I:82 , HIS I:85 , HIS I:106 , ILE I:107 , SER I:108 , ARG I:117
BINDING SITE FOR RESIDUE FA3 I 201
12
BC3
SOFTWARE
GLU G:59 , THR G:86 , SER G:87 , GLU H:59 , THR H:86 , SER H:87 , GLU I:59 , THR I:86 , SER I:87
BINDING SITE FOR RESIDUE TRS I1151
13
BC4
SOFTWARE
TYR J:28 , ASN J:79 , ALA J:81 , ALA J:82 , HIS J:85 , HIS J:106 , ILE J:107 , SER J:108 , ARG J:117 , ASP K:92
BINDING SITE FOR RESIDUE FA3 J 201
14
BC5
SOFTWARE
TYR K:28 , ASN K:79 , ALA K:81 , ALA K:82 , HIS K:85 , HIS K:106 , ILE K:107 , SER K:108 , ARG K:117 , ASP L:92
BINDING SITE FOR RESIDUE FA3 K 201
15
BC6
SOFTWARE
GLU J:59 , THR J:86 , GLU K:59 , THR K:86 , SER K:87 , GLU L:59 , THR L:86 , SER L:87
BINDING SITE FOR RESIDUE TRS K1151
16
BC7
SOFTWARE
ASP J:92 , TYR L:28 , ASN L:79 , ALA L:81 , ALA L:82 , HIS L:85 , HIS L:106 , ILE L:107 , SER L:108 , ARG L:117
BINDING SITE FOR RESIDUE FA3 L 201
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 12)
Info
All PROSITE Patterns/Profiles
1: DEHYDROQUINASE_II (A:12-29,B:12-29,C:12-29,D:12-29,E:...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DEHYDROQUINASE_II
PS01029
Dehydroquinase class II signature.
AROQ_STRCO
13-30
12
A:12-29
B:12-29
C:12-29
D:12-29
E:12-29
F:12-29
G:12-29
H:12-29
I:12-29
J:12-29
K:12-29
L:12-29
[
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]
Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d1v1ja_ (A:)
1b: SCOP_d1v1jb_ (B:)
1c: SCOP_d1v1jc_ (C:)
1d: SCOP_d1v1jd_ (D:)
1e: SCOP_d1v1je_ (E:)
1f: SCOP_d1v1jf_ (F:)
1g: SCOP_d1v1jg_ (G:)
1h: SCOP_d1v1jh_ (H:)
1i: SCOP_d1v1ji_ (I:)
1j: SCOP_d1v1jj_ (J:)
1k: SCOP_d1v1jk_ (K:)
1l: SCOP_d1v1jl_ (L:)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Flavodoxin-like
(1057)
Superfamily
:
Type II 3-dehydroquinate dehydratase
(40)
Family
:
Type II 3-dehydroquinate dehydratase
(38)
Protein domain
:
automated matches
(18)
Streptomyces coelicolor [TaxId: 1902]
(3)
1a
d1v1ja_
A:
1b
d1v1jb_
B:
1c
d1v1jc_
C:
1d
d1v1jd_
D:
1e
d1v1je_
E:
1f
d1v1jf_
F:
1g
d1v1jg_
G:
1h
d1v1jh_
H:
1i
d1v1ji_
I:
1j
d1v1jj_
J:
1k
d1v1jk_
K:
1l
d1v1jl_
L:
[
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]
CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_1v1jA00 (A:1-150)
1b: CATH_1v1jB00 (B:1-150)
1c: CATH_1v1jC00 (C:1-150)
1d: CATH_1v1jD00 (D:1-150)
1e: CATH_1v1jE00 (E:1-150)
1f: CATH_1v1jF00 (F:1-150)
1g: CATH_1v1jG00 (G:1-150)
1h: CATH_1v1jH00 (H:1-150)
1i: CATH_1v1jI00 (I:1-150)
1j: CATH_1v1jJ00 (J:1-150)
1k: CATH_1v1jK00 (K:1-150)
1l: CATH_1v1jL00 (L:1-150)
View:
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)
Topologies
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.9100, no name defined]
(22)
Streptomyces coelicolor. Organism_taxid: 1902.
(7)
1a
1v1jA00
A:1-150
1b
1v1jB00
B:1-150
1c
1v1jC00
C:1-150
1d
1v1jD00
D:1-150
1e
1v1jE00
E:1-150
1f
1v1jF00
F:1-150
1g
1v1jG00
G:1-150
1h
1v1jH00
H:1-150
1i
1v1jI00
I:1-150
1j
1v1jJ00
J:1-150
1k
1v1jK00
K:1-150
1l
1v1jL00
L:1-150
[
close CATH info
]
Pfam Domains
(1, 12)
Info
all PFAM domains
1a: PFAM_DHquinase_II_1v1jL01 (L:7-147)
1b: PFAM_DHquinase_II_1v1jL02 (L:7-147)
1c: PFAM_DHquinase_II_1v1jL03 (L:7-147)
1d: PFAM_DHquinase_II_1v1jL04 (L:7-147)
1e: PFAM_DHquinase_II_1v1jL05 (L:7-147)
1f: PFAM_DHquinase_II_1v1jL06 (L:7-147)
1g: PFAM_DHquinase_II_1v1jL07 (L:7-147)
1h: PFAM_DHquinase_II_1v1jL08 (L:7-147)
1i: PFAM_DHquinase_II_1v1jL09 (L:7-147)
1j: PFAM_DHquinase_II_1v1jL10 (L:7-147)
1k: PFAM_DHquinase_II_1v1jL11 (L:7-147)
1l: PFAM_DHquinase_II_1v1jL12 (L:7-147)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: DHquinase_II]
(16)
Family
:
DHquinase_II
(16)
Streptomyces coelicolor
(1)
1a
DHquinase_II-1v1jL01
L:7-147
1b
DHquinase_II-1v1jL02
L:7-147
1c
DHquinase_II-1v1jL03
L:7-147
1d
DHquinase_II-1v1jL04
L:7-147
1e
DHquinase_II-1v1jL05
L:7-147
1f
DHquinase_II-1v1jL06
L:7-147
1g
DHquinase_II-1v1jL07
L:7-147
1h
DHquinase_II-1v1jL08
L:7-147
1i
DHquinase_II-1v1jL09
L:7-147
1j
DHquinase_II-1v1jL10
L:7-147
1k
DHquinase_II-1v1jL11
L:7-147
1l
DHquinase_II-1v1jL12
L:7-147
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Asym.Unit (299 KB)
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Biol.Unit 1 (292 KB)
Header - Biol.Unit 1
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