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1V14
Biol. Unit 3
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Asym.Unit (114 KB)
Biol.Unit 1 (28 KB)
Biol.Unit 2 (29 KB)
Biol.Unit 3 (29 KB)
Biol.Unit 4 (28 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE COLICIN E9, MUTANT HIS103ALA, IN COMPLEX WITH MG+2 AND DSDNA (RESOLUTION 2.9A)
Authors
:
M. J. Mate, C. Kleanthous
Date
:
06 Apr 04 (Deposition) - 23 Jun 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,E,F (1x)
Biol. Unit 2: B,G,H (1x)
Biol. Unit 3: C,I,J (1x)
Biol. Unit 4: D,K,L (1x)
Keywords
:
Homing Endonucleases, Colicin, Hnh Motif, Beta-Beta-Alpha Metal Motif, Hydrolase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
M. J. Mate, C. Kleanthous
Structure-Based Analysis Of The Metal-Dependent Mechanism Of H-N-H Endonucleases
J. Biol. Chem. V. 279 34763 2004
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
1b: MAGNESIUM ION (MGb)
1c: MAGNESIUM ION (MGc)
1d: MAGNESIUM ION (MGd)
1e: MAGNESIUM ION (MGe)
1f: MAGNESIUM ION (MGf)
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Sites
(3, 3)
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All Sites
1: AC2 (SOFTWARE)
2: AC4 (SOFTWARE)
3: AC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
HIS C:102 , HIS C:127 , DT I:5 , DC I:6
BINDING SITE FOR RESIDUE MG C1134
2
AC4
SOFTWARE
DG G:3 , DC J:10
BINDING SITE FOR RESIDUE MG G1009
3
AC5
SOFTWARE
DC H:10 , DG I:3
BINDING SITE FOR RESIDUE MG I1009
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1v14a_ (A:)
1b: SCOP_d1v14b_ (B:)
1c: SCOP_d1v14c_ (C:)
1d: SCOP_d1v14d_ (D:)
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Protein Domains
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
His-Me finger endonucleases
(64)
Superfamily
:
His-Me finger endonucleases
(64)
Family
:
HNH-motif
(35)
Protein domain
:
DNase domain of colicin E9
(15)
Escherichia coli [TaxId: 562]
(15)
1a
d1v14a_
A:
1b
d1v14b_
B:
1c
d1v14c_
C:
1d
d1v14d_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1v14D00 (D:4-133)
1b: CATH_1v14A00 (A:2-133)
1c: CATH_1v14B00 (B:1-132)
1d: CATH_1v14C00 (C:2-133)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Colicin E7 immunity protein; Chain B, fragment: Endonuclease domain
(34)
Homologous Superfamily
:
Colicin e7 immunity protein. Chain B
(34)
Escherichia coli. Organism_taxid: 562.
(11)
1a
1v14D00
D:4-133
1b
1v14A00
A:2-133
1c
1v14B00
B:1-132
1d
1v14C00
C:2-133
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Colicin_DNase_1v14D01 (D:4-133)
1b: PFAM_Colicin_DNase_1v14D02 (D:4-133)
1c: PFAM_Colicin_DNase_1v14D03 (D:4-133)
1d: PFAM_Colicin_DNase_1v14D04 (D:4-133)
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Clan
:
His-Me_finger
(38)
Family
:
Colicin-DNase
(14)
Escherichia coli
(14)
1a
Colicin-DNase-1v14D01
D:4-133
1b
Colicin-DNase-1v14D02
D:4-133
1c
Colicin-DNase-1v14D03
D:4-133
1d
Colicin-DNase-1v14D04
D:4-133
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Show PDB file:
Asym.Unit (114 KB)
Header - Asym.Unit
Biol.Unit 1 (28 KB)
Header - Biol.Unit 1
Biol.Unit 2 (29 KB)
Header - Biol.Unit 2
Biol.Unit 3 (29 KB)
Header - Biol.Unit 3
Biol.Unit 4 (28 KB)
Header - Biol.Unit 4
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