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1V0P
Biol. Unit 1
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Asym.Unit (190 KB)
Biol.Unit 1 (98 KB)
Biol.Unit 2 (89 KB)
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(1)
Title
:
STRUCTURE OF P. FALCIPARUM PFPK5-PURVALANOL B LIGAND COMPLEX
Authors
:
S. Holton, A. Merckx, D. Burgess, C. Doerig, M. Noble, J. Endicott
Date
:
01 Apr 04 (Deposition) - 06 May 04 (Release) - 31 Mar 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Transferase, Serine/Threonine-Protein Kinase, Atp-Binding, Phosphorylation, Cdk
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
S. Holton, A. Merckx, D. Burgess, C. Doerig, M. Noble, J. Endicott
Structures Of P. Falciparum Pfpk5 Test The Cdk Regulation Paradigm And Suggest Mechanisms Of Small Molecule Inhibition
Structure V. 11 1329 2003
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: PURVALANOL B (PVBa)
1b: PURVALANOL B (PVBb)
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No.
Name
Count
Type
Full Name
1
PVB
1
Ligand/Ion
PURVALANOL B
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Sites
(1, 1)
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All Sites
1: AC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ILE A:10 , GLY A:11 , GLU A:12 , GLY A:13 , ALA A:30 , GLU A:80 , LEU A:82 , ASP A:83 , ASP A:85 , GLN A:129 , LEU A:132 , ALA A:142 , HOH A:2144 , HOH A:2145
BINDING SITE FOR RESIDUE PVB A1287
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(2, 2)
Info
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1: PROTEIN_KINASE_ATP (A:10-32)
2: PROTEIN_KINASE_ST (A:121-133)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
CDC2H_PLAFK
10-32
1
A:10-32
-
2
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
CDC2H_PLAFK
121-133
1
A:121-133
-
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1v0pa_ (A:)
1b: SCOP_d1v0pb_ (B:)
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)
Protein Domains
(
)
(
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(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
Cyclin-dependent PK, CDK2
(340)
Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
(4)
1a
d1v0pa_
A:
1b
d1v0pb_
B:
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1v0pA01 (A:1-81)
1b: CATH_1v0pB01 (B:2-83)
2a: CATH_1v0pA02 (A:82-286)
2b: CATH_1v0pB02 (B:84-286)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Phosphorylase Kinase; domain 1
(1392)
Homologous Superfamily
:
Phosphorylase Kinase; domain 1
(1392)
Plasmodium falciparum. Organism_taxid: 5833.
(4)
1a
1v0pA01
A:1-81
1b
1v0pB01
B:2-83
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Transferase(Phosphotransferase); domain 1
(1379)
Homologous Superfamily
:
Transferase(Phosphotransferase) domain 1
(1379)
Plasmodium falciparum. Organism_taxid: 5833.
(4)
2a
1v0pA02
A:82-286
2b
1v0pB02
B:84-286
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Pkinase_1v0pB01 (B:4-284)
1b: PFAM_Pkinase_1v0pB02 (B:4-284)
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Clan
:
PKinase
(934)
Family
:
Pkinase
(680)
Plasmodium falciparum (isolate K1 / Thailand)
(4)
1a
Pkinase-1v0pB01
B:4-284
1b
Pkinase-1v0pB02
B:4-284
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Asym.Unit (190 KB)
Header - Asym.Unit
Biol.Unit 1 (98 KB)
Header - Biol.Unit 1
Biol.Unit 2 (89 KB)
Header - Biol.Unit 2
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