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1V0N
Asym. Unit
Info
Asym.Unit (127 KB)
Biol.Unit 1 (122 KB)
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(1)
Title
:
XYLANASE XYN10A FROM STREPTOMYCES LIVIDANS IN COMPLEX WITH XYLOBIO-ISOFAGOMINE AT PH 7.5
Authors
:
T. M. Gloster, S. J. Williams, S. Roberts, C. A. Tarling, J. Wicki, S. G. Withers, G. J. Davies
Date
:
31 Mar 04 (Deposition) - 16 Aug 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.10
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Glycoside Hydrolase Family 10, Xylanase, Xylan Degradation, Deoxynojirimycin, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. M. Gloster, S. J. Williams, S. Roberts, C. A. Tarling, J. Wicki, S. G. Withers, G. J. Davies
Atomic Resolution Analyses Of The Binding Of Xylobiose-Derived Deoxynojirimycin And Isofagomine To Xylanase Xyn10A
Chem. Commun. (Camb. ) V. 16 1794 2004
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Hetero Components
(4, 5)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
2a: IMIDAZOLE (IMDa)
3a: PIPERIDINE-3,4-DIOL (XIFa)
4a: BETA-D-XYLOPYRANOSE (XYPa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
EDO
2
Ligand/Ion
1,2-ETHANEDIOL
2
IMD
1
Ligand/Ion
IMIDAZOLE
3
XIF
1
Ligand/Ion
PIPERIDINE-3,4-DIOL
4
XYP
1
Ligand/Ion
BETA-D-XYLOPYRANOSE
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:48 , HIS A:81 , TRP A:85 , GLU A:128 , GLN A:205 , GLU A:236 , TRP A:266 , TRP A:274 , XYP A:1306 , IMD A:1307
BINDING SITE FOR RESIDUE XIF A1305
2
AC2
SOFTWARE
GLU A:44 , ASN A:45 , LYS A:48 , GLN A:88 , TRP A:266 , TRP A:274 , XIF A:1305 , HOH A:2297 , HOH A:2612 , HOH A:2614
BINDING SITE FOR RESIDUE XYP A1306
3
AC3
SOFTWARE
SER A:12 , GLY A:13 , GLN A:194 , ARG A:195 , GLY A:196 , SER A:258 , CYS A:260 , LEU A:261 , HOH A:2606 , HOH A:2607
BINDING SITE FOR RESIDUE EDO A1303
4
AC4
SOFTWARE
HIS A:86 , GLN A:89 , GLN A:94 , SER A:141 , ASN A:142 , HOH A:2287 , HOH A:2608 , HOH A:2609 , HOH A:2610 , HOH A:2611
BINDING SITE FOR RESIDUE EDO A1304
5
AC5
SOFTWARE
GLU A:128 , TYR A:172 , GLN A:205 , ARG A:275 , XIF A:1305 , HOH A:2350 , HOH A:2618
BINDING SITE FOR RESIDUE IMD A1307
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: GH10_1 (A:229-239)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GH10_1
PS00591
Glycosyl hydrolases family 10 (GH10) active site.
XYNA_STRLI
270-280
1
A:229-239
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1v0na_ (A:)
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Classes
(
)
(
)
Folds
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)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
beta-glycanases
(284)
Protein domain
:
Xylanase A, catalytic core
(61)
Streptomyces lividans [TaxId: 1916]
(9)
1a
d1v0na_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1v0nA00 (A:1-302)
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Organisms
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)
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)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Glycosidases
(843)
Streptomyces lividans. Organism_taxid: 1916.
(8)
1a
1v0nA00
A:1-302
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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Asym.Unit (127 KB)
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