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1V0E
Biol. Unit 2
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Asym.Unit (689 KB)
Biol.Unit 1 (347 KB)
Biol.Unit 2 (347 KB)
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(1)
Title
:
ENDOSIALIDASE OF BACTERIOPHAGE K1F
Authors
:
K. Stummeyer, A. Dickmanns, M. Muehlenhoff, R. Gerady-Schahn, R. Ficner
Date
:
28 Mar 04 (Deposition) - 13 Dec 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Keywords
:
Endosialidase, Polysialic Acid Degradation, Hydrolase, Glycosidase.
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Stummeyer, A. Dickmanns, M. Muehlenhoff, R. Gerardy-Schahn, R. Ficner
Crystal Structure Of The Polysialic Acid-Degrading Endosialidase Of Bacteriophage K1F
Nat. Struct. Mol. Biol. V. 12 90 2005
(for further references see the
PDB file header
)
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Hetero Components
(1, 3)
Info
All Hetero Components
1a: PHOSPHATE ION (PO4a)
1b: PHOSPHATE ION (PO4b)
1c: PHOSPHATE ION (PO4c)
1d: PHOSPHATE ION (PO4d)
1e: PHOSPHATE ION (PO4e)
1f: PHOSPHATE ION (PO4f)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
PO4
3
Ligand/Ion
PHOSPHATE ION
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Sites
(3, 3)
Info
All Sites
1: AC4 (SOFTWARE)
2: AC5 (SOFTWARE)
3: AC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC4
SOFTWARE
GLU D:818 , GLY D:819 , HOH D:2468 , HOH D:2529 , PRO E:829 , THR E:830 , HOH E:2406
BINDING SITE FOR RESIDUE PO4 D1685
2
AC5
SOFTWARE
ALA D:805 , GLU E:818 , GLY E:819 , HOH E:2401 , PRO F:829 , THR F:830 , HOH F:2508
BINDING SITE FOR RESIDUE PO4 F1685
3
AC6
SOFTWARE
PRO D:829 , THR D:830 , HOH D:2471 , ALA E:805 , GLU F:818 , GLY F:819 , HOH F:2509
BINDING SITE FOR RESIDUE PO4 F1686
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 12)
Info
All SCOP Domains
1a: SCOP_d1v0ea1 (A:245-760)
1b: SCOP_d1v0eb1 (B:245-760)
1c: SCOP_d1v0ec1 (C:245-760)
1d: SCOP_d1v0ed1 (D:245-760)
1e: SCOP_d1v0ee1 (E:245-760)
1f: SCOP_d1v0ef1 (F:245-760)
2a: SCOP_d1v0ea2 (A:761-910)
2b: SCOP_d1v0eb2 (B:761-910)
2c: SCOP_d1v0ec2 (C:761-910)
2d: SCOP_d1v0ed2 (D:761-910)
2e: SCOP_d1v0ee2 (E:761-910)
2f: SCOP_d1v0ef2 (F:761-910)
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Classes
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)
(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
6-bladed beta-propeller
(327)
Superfamily
:
Sialidases
(238)
Family
:
Endo-alpha-sialidase
(6)
Protein domain
:
Endo-alpha-sialidase
(2)
Bacteriophage K1F [TaxId: 344021]
(2)
1a
d1v0ea1
A:245-760
1b
d1v0eb1
B:245-760
1c
d1v0ec1
C:245-760
1d
d1v0ed1
D:245-760
1e
d1v0ee1
E:245-760
1f
d1v0ef1
F:245-760
Fold
:
Triple-stranded beta-helix
(23)
Superfamily
:
Phage fibre proteins
(23)
Family
:
Endo-alpha-sialidase
(2)
Protein domain
:
Endo-alpha-sialidase
(2)
Bacteriophage K1F [TaxId: 344021]
(2)
2a
d1v0ea2
A:761-910
2b
d1v0eb2
B:761-910
2c
d1v0ec2
C:761-910
2d
d1v0ed2
D:761-910
2e
d1v0ee2
E:761-910
2f
d1v0ef2
F:761-910
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CATH Domains
(4, 24)
Info
all CATH domains
1a: CATH_1v0eA01 (A:245-312)
1b: CATH_1v0eB01 (B:245-312)
1c: CATH_1v0eC01 (C:245-312)
1d: CATH_1v0eE01 (E:245-312)
1e: CATH_1v0eF01 (F:245-312)
1f: CATH_1v0eD01 (D:245-311)
2a: CATH_1v0eA04 (A:756-910)
2b: CATH_1v0eB04 (B:756-910)
2c: CATH_1v0eC04 (C:756-910)
2d: CATH_1v0eE04 (E:756-910)
2e: CATH_1v0eF04 (F:756-910)
2f: CATH_1v0eD04 (D:757-910)
3a: CATH_1v0eD02 (D:312-424,D:510-756)
3b: CATH_1v0eA02 (A:313-423,A:511-755)
3c: CATH_1v0eB02 (B:313-423,B:511-755)
3d: CATH_1v0eC02 (C:313-423,C:511-755)
3e: CATH_1v0eE02 (E:313-423,E:511-755)
3f: CATH_1v0eF02 (F:313-423,F:511-755)
4a: CATH_1v0eD03 (D:425-509)
4b: CATH_1v0eA03 (A:424-510)
4c: CATH_1v0eB03 (B:424-510)
4d: CATH_1v0eC03 (C:424-510)
4e: CATH_1v0eE03 (E:424-510)
4f: CATH_1v0eF03 (F:424-510)
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(
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Transcription Regulator spoIIAA
(28)
Homologous Superfamily
:
Endo-alpha-sialidase; domain 1
(2)
Coliphage k1f. Organism_taxid: 344021.
(2)
1a
1v0eA01
A:245-312
1b
1v0eB01
B:245-312
1c
1v0eC01
C:245-312
1d
1v0eE01
E:245-312
1e
1v0eF01
F:245-312
1f
1v0eD01
D:245-311
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
Endosialidase, domain 4
(2)
Homologous Superfamily
:
Endosialidase, domain 4
(2)
Coliphage k1f. Organism_taxid: 344021.
(2)
2a
1v0eA04
A:756-910
2b
1v0eB04
B:756-910
2c
1v0eC04
C:756-910
2d
1v0eE04
E:756-910
2e
1v0eF04
F:756-910
2f
1v0eD04
D:757-910
Class
:
Mainly Beta
(13760)
Architecture
:
6 Propellor
(215)
Topology
:
Neuraminidase
(215)
Homologous Superfamily
:
[code=2.120.10.10, no name defined]
(150)
Coliphage k1f. Organism_taxid: 344021.
(2)
3a
1v0eD02
D:312-424,D:510-756
3b
1v0eA02
A:313-423,A:511-755
3c
1v0eB02
B:313-423,B:511-755
3d
1v0eC02
C:313-423,C:511-755
3e
1v0eE02
E:313-423,E:511-755
3f
1v0eF02
F:313-423,F:511-755
Architecture
:
Beta Barrel
(4804)
Topology
:
Elongation Factor Tu (Ef-tu); domain 3
(323)
Homologous Superfamily
:
[code=2.40.30.20, no name defined]
(40)
Coliphage k1f. Organism_taxid: 344021.
(2)
4a
1v0eD03
D:425-509
4b
1v0eA03
A:424-510
4c
1v0eB03
B:424-510
4d
1v0eC03
C:424-510
4e
1v0eE03
E:424-510
4f
1v0eF03
F:424-510
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (689 KB)
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Header - Biol.Unit 1
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