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Getting 'Biological Unit' information from database.
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Getting 'Hetero Component' information from database.
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Getting 'Exon' information from database.
1V04
Asym. Unit
Info
Asym.Unit (61 KB)
Biol.Unit 1 (56 KB)
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(1)
Title
:
SERUM PARAOXONASE BY DIRECTED EVOLUTION
Authors
:
M. Harel, A. Aharoni, L. Gaidukov, B. Brumshtein, O. Khersonsky, S. Yag R. Meged, H. Dvir, R. B. G. Ravelli, A. Mccarthy, L. Toker, I. Silman, J. L. Sussman, D. S. Tawfik
Date
:
22 Mar 04 (Deposition) - 23 Apr 04 (Release) - 22 Mar 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Paraoxonase, Hydrolase, Directed Evolution, Antioxidant, Israel Structural Proteomics Center, Ispc, Structural Genomics
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Harel, A. Aharoni, L. Gaidukov, B. Brumshtein, O. Khersonsky, R. Meged, H. Dvir, R. B. G. Ravelli, A. Mccarthy, L. Toker, I. Silman, J. L. Sussman, D. S. Tawfik
Structure And Evolution Of The Serum Paraoxonase Family Of Detoxifying And Anti-Atherosclerotic Enzymes
Nat. Struct. Mol. Biol. V. 11 412 2004
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
2a: PHOSPHATE ION (PO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
2
Ligand/Ion
CALCIUM ION
2
PO4
1
Ligand/Ion
PHOSPHATE ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:54 , ILE A:117 , ASP A:169 , HOH A:2010 , HOH A:2011 , HOH A:2053
BINDING SITE FOR RESIDUE CA A1356
2
AC2
SOFTWARE
GLU A:53 , ASN A:168 , ASN A:224 , ASP A:269 , ASN A:270 , PO4 A:1358 , HOH A:2009
BINDING SITE FOR RESIDUE CA A1357
3
AC3
SOFTWARE
GLU A:53 , HIS A:115 , ASN A:168 , ASN A:224 , ASP A:269 , THR A:332 , VAL A:346 , CA A:1357
BINDING SITE FOR RESIDUE PO4 A1358
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SAPs(SNPs)/Variants
(4, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_006043 (L55M, chain A, )
2: VAR_015882 (I102V, chain A, )
3: VAR_055342 (R160G, chain A, )
4: VAR_006044 (K192R, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_006043
L
55
M
PON1_HUMAN
Polymorphism
854560
A
L
55
M
2
UniProt
VAR_015882
I
102
V
PON1_HUMAN
Polymorphism
---
A
I
102
V
3
UniProt
VAR_055342
R
160
G
PON1_HUMAN
Polymorphism
13306698
A
R
160
G
4
UniProt
VAR_006044
Q
192
R
PON1_HUMAN
Polymorphism
662
A
K
192
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(9, 9)
Info
All Exons
Exon 1.1a (A:16-25)
Exon 1.2b (A:25-49)
Exon 1.3 (A:49-67)
Exon 1.4a (A:68-124 (gaps))
Exon 1.5b (A:124-166)
Exon 1.6 (A:166-233)
Exon 1.7 (A:233-260)
Exon 1.8b (A:261-303)
Exon 1.9c (A:304-355)
View:
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All Exon Boundaries
01: Boundary -/1.1a
02: Boundary 1.1a/1.2b
03: Boundary 1.2b/1.3
04: Boundary 1.3/1.4a
05: Boundary 1.4a/1.5b
06: Boundary 1.5b/1.6
07: Boundary 1.6/1.7
08: Boundary 1.7/1.8b
09: Boundary 1.8b/1.9c
10: Boundary 1.9c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000222381
1a
ENSE00000877451
chr7:
94954019-94953714
306
PON1_HUMAN
1-25
25
1
A:16-25
10
1.2b
ENST00000222381
2b
ENSE00000434428
chr7:
94947705-94947635
71
PON1_HUMAN
25-49
25
1
A:25-49
25
1.3
ENST00000222381
3
ENSE00000706211
chr7:
94946101-94946046
56
PON1_HUMAN
49-67
19
1
A:49-67
19
1.4a
ENST00000222381
4a
ENSE00000706210
chr7:
94944802-94944634
169
PON1_HUMAN
68-124
57
1
A:68-124 (gaps)
57
1.5b
ENST00000222381
5b
ENSE00001620379
chr7:
94940889-94940763
127
PON1_HUMAN
124-166
43
1
A:124-166
43
1.6
ENST00000222381
6
ENSE00001622965
chr7:
94937523-94937323
201
PON1_HUMAN
166-233
68
1
A:166-233
68
1.7
ENST00000222381
7
ENSE00001662155
chr7:
94935678-94935597
82
PON1_HUMAN
233-260
28
1
A:233-260
28
1.8b
ENST00000222381
8b
ENSE00001748242
chr7:
94931645-94931517
129
PON1_HUMAN
261-303
43
1
A:261-303
43
1.9c
ENST00000222381
9c
ENSE00001182780
chr7:
94928414-94926988
1427
PON1_HUMAN
304-355
52
1
A:304-355
52
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1v04a_ (A:)
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
6-bladed beta-propeller
(327)
Superfamily
:
Calcium-dependent phosphotriesterase
(35)
Family
:
Serum paraoxonase/arylesterase 1, PON1
(3)
Protein domain
:
Serum paraoxonase/arylesterase 1, PON1
(2)
Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
(1)
1a
d1v04a_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1v04A00 (A:16-355)
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
6 Propellor
(215)
Topology
:
Neuraminidase
(215)
Homologous Superfamily
:
TolB, C-terminal domain
(42)
Homo sapiens, oryctolagus cuniculus, mus musculus, rattus rattus.
(1)
1a
1v04A00
A:16-355
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
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Protein
Nucleic
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Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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Asym.Unit (61 KB)
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