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Asym. Unit
Info
Asym.Unit (182 KB)
Biol.Unit 1 (90 KB)
Biol.Unit 2 (88 KB)
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(1)
Title
:
ERYTHRINA CRISTAGALLI LECTIN
Authors
:
K. Turton, R. Natesh, N. Thiyagarajan, J. A. Chaddock, K. R. Acharya
Date
:
21 Mar 04 (Deposition) - 22 Jun 04 (Release) - 06 Oct 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Lectin, Non-Canonical Dimer, Carbohydrate-Binding, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Turton, R. Natesh, N. Thiyagarajan, J. A. Chaddock, K. R. Acharya
Crystal Structures Of Erythrina Cristagalli Lectin With Bound N-Linked Oligosaccharide And Lactose
Glycobiology V. 14 923 2004
[
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Hetero Components
(3, 12)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: BETA-LACTOSE (LATa)
2b: BETA-LACTOSE (LATb)
2c: BETA-LACTOSE (LATc)
2d: BETA-LACTOSE (LATd)
3a: MANGANESE (II) ION (MNa)
3b: MANGANESE (II) ION (MNb)
3c: MANGANESE (II) ION (MNc)
3d: MANGANESE (II) ION (MNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
4
Ligand/Ion
CALCIUM ION
2
LAT
4
Ligand/Ion
BETA-LACTOSE
3
MN
4
Ligand/Ion
MANGANESE (II) ION
[
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:89 , GLY A:107 , PHE A:131 , ASN A:133 , GLY A:217 , ALA A:218 , GLN A:219 , ALA A:222 , HOH A:2185 , HOH A:2290 , HOH A:2291 , HOH A:2292 , HOH A:2293 , HOH A:2294
BINDING SITE FOR RESIDUE LAT A1240
02
AC2
SOFTWARE
ASP B:89 , GLY B:107 , PHE B:131 , ASN B:133 , GLY B:217 , ALA B:218 , GLN B:219 , ALA B:222 , HOH B:2103 , HOH B:2221
BINDING SITE FOR RESIDUE LAT B1240
03
AC3
SOFTWARE
ASP C:89 , GLY C:107 , PHE C:131 , ASN C:133 , GLY C:217 , ALA C:218 , GLN C:219 , ALA C:222 , HOH C:2226 , HOH C:2325 , HOH C:2326 , HOH C:2327 , HOH C:2328
BINDING SITE FOR RESIDUE LAT C1240
04
AC4
SOFTWARE
ASP D:89 , GLY D:107 , PHE D:131 , ASN D:133 , GLY D:217 , ALA D:218 , GLN D:219 , ALA D:222 , HOH D:2150 , HOH D:2167 , HOH D:2262 , HOH D:2264 , HOH D:2265 , HOH D:2266 , HOH D:2267 , HOH D:2268
BINDING SITE FOR RESIDUE LAT D1240
05
AC5
SOFTWARE
GLU A:127 , ASP A:129 , ASP A:136 , HIS A:142 , HOH A:2295 , HOH A:2296
BINDING SITE FOR RESIDUE MN A1241
06
AC6
SOFTWARE
ASP A:129 , PHE A:131 , ASN A:133 , ASP A:136 , HOH A:2149 , HOH A:2162
BINDING SITE FOR RESIDUE CA A1242
07
AC7
SOFTWARE
GLU B:127 , ASP B:129 , ASP B:136 , HIS B:142 , HOH B:2222 , HOH B:2223
BINDING SITE FOR RESIDUE MN B1241
08
AC8
SOFTWARE
ASP B:129 , PHE B:131 , ASN B:133 , ASP B:136 , HOH B:2105 , HOH B:2118
BINDING SITE FOR RESIDUE CA B1242
09
AC9
SOFTWARE
GLU C:127 , ASP C:129 , ASP C:136 , HIS C:142 , HOH C:2329 , HOH C:2330
BINDING SITE FOR RESIDUE MN C1241
10
BC1
SOFTWARE
ASP C:129 , PHE C:131 , ASN C:133 , ASP C:136 , HOH C:2181 , HOH C:2196
BINDING SITE FOR RESIDUE CA C1242
11
BC2
SOFTWARE
GLU D:127 , ASP D:129 , ASP D:136 , HIS D:142 , HOH D:2269 , HOH D:2270
BINDING SITE FOR RESIDUE MN D1241
12
BC3
SOFTWARE
ASP D:129 , PHE D:131 , ASN D:133 , ASP D:136 , HOH D:2136 , HOH D:2149
BINDING SITE FOR RESIDUE CA D1242
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1v00a_ (A:)
1b: SCOP_d1v00b_ (B:)
1c: SCOP_d1v00c_ (C:)
1d: SCOP_d1v00d_ (D:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Concanavalin A-like lectins/glucanases
(797)
Superfamily
:
Concanavalin A-like lectins/glucanases
(797)
Family
:
Legume lectins
(238)
Protein domain
:
Legume lectin
(110)
Cockspur coral tree (Erythrina crista-galli) [TaxId: 49817]
(5)
1a
d1v00a_
A:
1b
d1v00b_
B:
1c
d1v00c_
C:
1d
d1v00d_
D:
[
close SCOP info
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1v00A00 (A:1-240)
1b: CATH_1v00B00 (B:1-240)
1c: CATH_1v00D00 (D:1-240)
1d: CATH_1v00C00 (C:1-241)
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
[code=2.60.120.200, no name defined]
(421)
Cockspur coral tree (Erythrina crista-galli)
(5)
1a
1v00A00
A:1-240
1b
1v00B00
B:1-240
1c
1v00D00
D:1-240
1d
1v00C00
C:1-241
[
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Lectin_legB_1v00D01 (D:2-234)
1b: PFAM_Lectin_legB_1v00D02 (D:2-234)
1c: PFAM_Lectin_legB_1v00D03 (D:2-234)
1d: PFAM_Lectin_legB_1v00D04 (D:2-234)
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Clan
:
Concanavalin
(293)
Family
:
Lectin_legB
(93)
Erythrina crista-galli (Cockspur coral tree) (Micropteryx crista-galli)
(3)
1a
Lectin_legB-1v00D01
D:2-234
1b
Lectin_legB-1v00D02
D:2-234
1c
Lectin_legB-1v00D03
D:2-234
1d
Lectin_legB-1v00D04
D:2-234
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Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Show PDB file:
Asym.Unit (182 KB)
Header - Asym.Unit
Biol.Unit 1 (90 KB)
Header - Biol.Unit 1
Biol.Unit 2 (88 KB)
Header - Biol.Unit 2
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