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1UZR
Asym. Unit
Info
Asym.Unit (155 KB)
Biol.Unit 1 (99 KB)
Biol.Unit 2 (101 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE CLASS IB RIBONUCLEOTIDE REDUCTASE R2F-2 SUBUNIT FROM MYCOBACTERIUM TUBERCULOSIS
Authors
:
M. Uppsten, J. Davis, H. Rubin, U. Uhlin
Date
:
15 Mar 04 (Deposition) - 08 Jul 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B (2x)
Keywords
:
Reductase, Ribonucleotide Reductase, Tuberculosis, R2F-2, Radical Generation, Small Subunit
(Keyword Search:
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)
Reference
:
M. Uppsten, J. Davis, H. Rubin, U. Uhlin
Crystal Structure Of The Biologically Active Form Of Class Ib Ribonucleotide Reductase Small Subunit From Mycobacterium Tuberculosis
Febs Lett. V. 569 117 2004
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Hetero Components
(3, 12)
Info
All Hetero Components
1a: CITRIC ACID (CITa)
1b: CITRIC ACID (CITb)
1c: CITRIC ACID (CITc)
2a: FE (III) ION (FEa)
2b: FE (III) ION (FEb)
2c: FE (III) ION (FEc)
2d: FE (III) ION (FEd)
2e: FE (III) ION (FEe)
2f: FE (III) ION (FEf)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CIT
3
Ligand/Ion
CITRIC ACID
2
FE
6
Ligand/Ion
FE (III) ION
3
GOL
3
Ligand/Ion
GLYCEROL
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:72 , GLU A:103 , HIS A:106 , GLU A:197 , FE A:1293 , HOH A:2060
BINDING SITE FOR RESIDUE FE A1292
02
AC2
SOFTWARE
GLU A:103 , GLU A:163 , GLU A:197 , HIS A:200 , FE A:1292 , HOH A:2060
BINDING SITE FOR RESIDUE FE A1293
03
AC3
SOFTWARE
ASP B:72 , GLU B:103 , HIS B:106 , GLU B:197 , FE B:1298
BINDING SITE FOR RESIDUE FE B1297
04
AC4
SOFTWARE
GLU B:103 , GLU B:163 , GLU B:197 , HIS B:200 , FE B:1297 , HOH B:2050
BINDING SITE FOR RESIDUE FE B1298
05
AC5
SOFTWARE
ASP C:72 , GLU C:103 , HIS C:106 , GLU C:197 , FE C:1293
BINDING SITE FOR RESIDUE FE C1292
06
AC6
SOFTWARE
GLU C:103 , GLU C:163 , GLU C:197 , HIS C:200 , FE C:1292 , HOH C:2077
BINDING SITE FOR RESIDUE FE C1293
07
AC7
SOFTWARE
GLU A:151 , PRO A:152 , LEU A:153 , LYS A:154 , LEU A:223
BINDING SITE FOR RESIDUE CIT A1294
08
AC8
SOFTWARE
GLU B:151 , PRO B:152 , LEU B:153 , LYS B:154
BINDING SITE FOR RESIDUE CIT B1299
09
AC9
SOFTWARE
GLU C:151 , PRO C:152 , LEU C:153 , LYS C:154 , THR C:219 , LEU C:223
BINDING SITE FOR RESIDUE CIT C1294
10
BC1
SOFTWARE
ARG A:63
BINDING SITE FOR RESIDUE GOL A1295
11
BC2
SOFTWARE
ARG B:63
BINDING SITE FOR RESIDUE GOL B1300
12
BC3
SOFTWARE
GLN C:59 , ARG C:63
BINDING SITE FOR RESIDUE GOL C1295
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: RIBORED_SMALL (A:102-118,B:102-118,C:102-118,A:10...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RIBORED_SMALL
PS00368
Ribonucleotide reductase small subunit signature.
RIR2B_MYCTO
102-118
3
A:102-118
B:102-118
C:102-118
RIR2B_MYCTU
102-118
3
A:102-118
B:102-118
C:102-118
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d1uzra_ (A:)
1b: SCOP_d1uzrb_ (B:)
1c: SCOP_d1uzrc_ (C:)
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Protein Domains
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)
Class
:
All alpha proteins
(14657)
Fold
:
Ferritin-like
(533)
Superfamily
:
Ferritin-like
(489)
Family
:
Ribonucleotide reductase-like
(185)
Protein domain
:
Ribonucleotide reductase R2
(45)
Mycobacterium tuberculosis [TaxId: 1773]
(1)
1a
d1uzra_
A:
1b
d1uzrb_
B:
1c
d1uzrc_
C:
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_1uzrB00 (B:9-296)
1b: CATH_1uzrC00 (C:9-291)
1c: CATH_1uzrA00 (A:10-291)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Ribonucleotide Reductase, subunit A
(86)
Homologous Superfamily
:
Ribonucleotide Reductase, subunit A
(86)
Mycobacterium tuberculosis. Organism_taxid: 1773.
(1)
1a
1uzrB00
B:9-296
1b
1uzrC00
C:9-291
1c
1uzrA00
A:10-291
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Pfam Domains
(1, 3)
Info
all PFAM domains
1a: PFAM_Ribonuc_red_sm_1uzrC01 (C:9-286)
1b: PFAM_Ribonuc_red_sm_1uzrC02 (C:9-286)
1c: PFAM_Ribonuc_red_sm_1uzrC03 (C:9-286)
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Clan
:
Ferritin
(185)
Family
:
Ribonuc_red_sm
(41)
Mycobacterium tuberculosis
(1)
1a
Ribonuc_red_sm-1uzrC01
C:9-286
1b
Ribonuc_red_sm-1uzrC02
C:9-286
1c
Ribonuc_red_sm-1uzrC03
C:9-286
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (155 KB)
Header - Asym.Unit
Biol.Unit 1 (99 KB)
Header - Biol.Unit 1
Biol.Unit 2 (101 KB)
Header - Biol.Unit 2
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