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1UZJ
Biol. Unit 1
Info
Asym.Unit (85 KB)
Biol.Unit 1 (29 KB)
Biol.Unit 2 (29 KB)
Biol.Unit 3 (28 KB)
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(1)
Title
:
INTEGRIN BINDING CBEGF22-TB4-CBEGF33 FRAGMENT OF HUMAN FIBRILLIN-1, HOLO FORM.
Authors
:
S. S. J. Lee, V. Knott, K. Harlos, P. A. Handford, D. I. Stuart
Date
:
12 Mar 04 (Deposition) - 08 Apr 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.25
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Keywords
:
Matrix Protein, Extra-Cellular Matrix, Fibrillin-1, Cbegf Domain, Tb Domain Matrix Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. S. J. Lee, V. Knott, J. Jovanovi, K. Harlos, J. Grimes, L. Choulier, H. Mardon, D. I. Stuart, P. A. Handford
Structure Of The Integrin Binding Fragment From Fibrillin-1 Gives New Insights Into Microfibril Organization
Structure V. 12 717 2004
[
close entry info
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:1487 , VAL A:1488 , GLU A:1490 , ASN A:1504 , THR A:1505 , SER A:1508
BINDING SITE FOR RESIDUE CA A1648
2
AC2
SOFTWARE
ASP A:1606 , ILE A:1607 , GLU A:1609 , ASN A:1624 , THR A:1625 , SER A:1628 , HOH A:2068
BINDING SITE FOR RESIDUE CA A1649
[
close Site info
]
SAPs(SNPs)/Variants
(14, 14)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_065998 (D3487A, chain A/B/A, )
02: VAR_065999 (N3489K, chain A/B/A, )
03: VAR_002326 (C3513R, chain A/B/A, )
04: VAR_018012 (R3530C, chain A/B/A, )
05: VAR_023886 (C3564F, chain A/B/A, )
06: VAR_064046 (C3564S, chain A/B/A, )
07: VAR_018013 (C3564Y, chain A/B/A, )
08: VAR_064047 (W3570C, chain A/B/A, )
09: VAR_023887 (M3576T, chain A/B/A, )
10: VAR_064048 (C3577G, chain A/B/A, )
11: VAR_002327 (C3589F, chain A/B/A, )
12: VAR_064049 (G3594D, chain A/B/A, )
13: VAR_002328 (C3610G, chain A/B/A, )
14: VAR_023888 (C3631G, chain A/B/A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_065998
D
1487
A
FBN1_HUMAN
Disease (MFS)
---
A
B
A
D
1487
2487
3487
A
02
UniProt
VAR_065999
N
1489
K
FBN1_HUMAN
Disease (MFS)
---
A
B
A
N
1489
2489
3489
K
03
UniProt
VAR_002326
C
1513
R
FBN1_HUMAN
Disease (MFS)
---
A
B
A
C
1513
2513
3513
R
04
UniProt
VAR_018012
R
1530
C
FBN1_HUMAN
Polymorphism
111401431
A
B
A
R
1530
2530
3530
C
05
UniProt
VAR_023886
C
1564
F
FBN1_HUMAN
Disease (MFS)
---
A
B
A
C
1564
2564
3564
F
06
UniProt
VAR_064046
C
1564
S
FBN1_HUMAN
Disease (SSKS)
---
A
B
A
C
1564
2564
3564
S
07
UniProt
VAR_018013
C
1564
Y
FBN1_HUMAN
Disease (MFS)
---
A
B
A
C
1564
2564
3564
Y
08
UniProt
VAR_064047
W
1570
C
FBN1_HUMAN
Disease (SSKS)
---
A
B
A
W
1570
2570
3570
C
09
UniProt
VAR_023887
M
1576
T
FBN1_HUMAN
Disease (MFS)
---
A
B
A
M
1576
2576
3576
T
10
UniProt
VAR_064048
C
1577
G
FBN1_HUMAN
Disease (SSKS)
---
A
B
A
C
1577
2577
3577
G
11
UniProt
VAR_002327
C
1589
F
FBN1_HUMAN
Disease (MFS)
---
A
B
A
C
1589
2589
3589
F
12
UniProt
VAR_064049
G
1594
D
FBN1_HUMAN
Disease (SSKS)
---
A
B
A
G
1594
2594
3594
D
13
UniProt
VAR_002328
C
1610
G
FBN1_HUMAN
Disease (MFS)
---
A
B
A
C
1610
2610
3610
G
14
UniProt
VAR_023888
C
1631
G
FBN1_HUMAN
Disease (MFS)
---
A
B
A
C
1631
2631
3631
G
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(5, 8)
Info
All PROSITE Patterns/Profiles
1: EGF_2 (A:1631-1646)
2: EGF_3 (A:1487-1527,A:1606-1647)
3: TB (A:1532-1589)
4: EGF_CA (A:1487-1511,A:1606-1631)
5: ASX_HYDROXYL (A:1502-1513,A:1622-1633)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EGF_2
PS01186
EGF-like domain signature 2.
FBN1_HUMAN
134-145
166-177
313-328
474-488
513-528
555-570
596-611
748-763
790-805
1053-1068
1180-1195
1221-1236
1263-1278
1305-1320
1348-1361
1389-1402
1429-1444
1470-1485
1631-1646
1791-1806
1833-1847
1874-1889
1914-1928
1956-1971
1998-2011
2038-2053
2151-2164
2190-2204
2230-2245
2274-2289
2316-2331
2427-2442
2468-2483
2509-2522
2550-2565
2590-2605
2631-2646
2672-2686
1
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
A:1631-1646
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
2
EGF_3
PS50026
EGF-like domain profile.
FBN1_HUMAN
146-178
246-287
288-329
490-525
530-571
572-612
613-653
723-764
765-806
807-846
910-951
1028-1069
1070-1112
1113-1154
1155-1196
1197-1237
1238-1279
1280-1317
1322-1362
1363-1401
1404-1445
1446-1482
1487-1527
1606-1647
1648-1684
1766-1807
1808-1848
1849-1886
1891-1926
1930-1972
1973-2012
2013-2054
2127-2165
2166-2205
2206-2246
2247-2290
2291-2332
2402-2439
2444-2484
2485-2521
2524-2566
2567-2606
2607-2643
2648-2687
2
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
A:1487-1527
-
-
A:1606-1647
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
3
TB
PS51364
TGF-beta binding (TB) domain profile.
FBN1_HUMAN
184-227
334-389
659-711
851-890
956-1008
1532-1589
1693-1748
2059-2111
2337-2390
1
-
-
-
-
-
A:1532-1589
-
-
-
-
-
4
EGF_CA
PS01187
Calcium-binding EGF-like domain signature.
FBN1_HUMAN
246-271
288-313
490-513
530-555
572-596
613-637
723-748
765-790
807-830
910-935
1028-1053
1070-1095
1113-1138
1155-1180
1197-1221
1238-1263
1280-1305
1322-1348
1363-1389
1404-1429
1446-1470
1487-1511
1606-1631
1648-1672
1766-1791
1808-1833
1849-1874
1891-1914
1930-1956
1973-1998
2013-2038
2127-2151
2166-2190
2206-2230
2247-2274
2291-2316
2402-2427
2444-2468
2485-2509
2524-2550
2567-2590
2601-2631
2648-2672
2
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
A:1487-1511
-
-
A:1606-1631
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
5
ASX_HYDROXYL
PS00010
Aspartic acid and asparagine hydroxylation site.
FBN1_HUMAN
262-273
304-315
504-515
546-557
587-598
628-639
739-750
781-792
821-832
926-937
1044-1055
1086-1097
1129-1140
1171-1182
1212-1223
1254-1265
1296-1307
1339-1350
1380-1391
1420-1431
1461-1472
1502-1513
1622-1633
1663-1674
1782-1793
1824-1835
1865-1876
1905-1916
1947-1958
1989-2000
2029-2040
2142-2153
2181-2192
2221-2232
2265-2276
2307-2318
2418-2429
2459-2470
2500-2511
2541-2552
2581-2592
2622-2633
2663-2674
2
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
A:1502-1513
-
-
A:1622-1633
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 9)
Info
All SCOP Domains
1a: SCOP_d1uzja1 (A:1486-1528)
1b: SCOP_d1uzja2 (A:1605-1647)
1c: SCOP_d1uzjb1 (B:2486-2528)
1d: SCOP_d1uzjb2 (B:2605-2647)
1e: SCOP_d1uzjc1 (C:3486-3528)
1f: SCOP_d1uzjc2 (C:3605-3647)
2a: SCOP_d1uzja3 (A:1529-1604)
2b: SCOP_d1uzjb3 (B:2529-2604)
2c: SCOP_d1uzjc3 (C:3529-3604)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Small proteins
(3458)
Fold
:
Knottins (small inhibitors, toxins, lectins)
(761)
Superfamily
:
EGF/Laminin
(347)
Family
:
EGF-type module
(304)
Protein domain
:
Fibrillin-1
(7)
Human (Homo sapiens) [TaxId: 9606]
(7)
1a
d1uzja1
A:1486-1528
1b
d1uzja2
A:1605-1647
1c
d1uzjb1
B:2486-2528
1d
d1uzjb2
B:2605-2647
1e
d1uzjc1
C:3486-3528
1f
d1uzjc2
C:3605-3647
Fold
:
TB module/8-cys domain
(6)
Superfamily
:
TB module/8-cys domain
(6)
Family
:
TB module/8-cys domain
(6)
Protein domain
:
Fibrillin
(5)
Human (Homo sapiens) [TaxId: 9606]
(5)
2a
d1uzja3
A:1529-1604
2b
d1uzjb3
B:2529-2604
2c
d1uzjc3
C:3529-3604
[
close SCOP info
]
CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_1uzjA01 (A:1486-1530)
1b: CATH_1uzjB01 (B:2486-2530)
1c: CATH_1uzjC01 (C:3486-3530)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Ribbon
(789)
Topology
:
Laminin
(270)
Homologous Superfamily
:
Laminin
(263)
Human (Homo sapiens)
(195)
1a
1uzjA01
A:1486-1530
1b
1uzjB01
B:2486-2530
1c
1uzjC01
C:3486-3530
[
close CATH info
]
Pfam Domains
(2, 9)
Info
all PFAM domains
1a: PFAM_EGF_CA_1uzjC01 (C:3606-3646)
1b: PFAM_EGF_CA_1uzjC02 (C:3606-3646)
1c: PFAM_EGF_CA_1uzjC03 (C:3606-3646)
1d: PFAM_EGF_CA_1uzjC04 (C:3606-3646)
1e: PFAM_EGF_CA_1uzjC05 (C:3606-3646)
1f: PFAM_EGF_CA_1uzjC06 (C:3606-3646)
2a: PFAM_TB_1uzjC07 (C:3547-3588)
2b: PFAM_TB_1uzjC08 (C:3547-3588)
2c: PFAM_TB_1uzjC09 (C:3547-3588)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
EGF
(60)
Family
:
EGF_CA
(18)
Homo sapiens (Human)
(14)
1a
EGF_CA-1uzjC01
C:3606-3646
1b
EGF_CA-1uzjC02
C:3606-3646
1c
EGF_CA-1uzjC03
C:3606-3646
1d
EGF_CA-1uzjC04
C:3606-3646
1e
EGF_CA-1uzjC05
C:3606-3646
1f
EGF_CA-1uzjC06
C:3606-3646
Clan
:
no clan defined [family: TB]
(5)
Family
:
TB
(5)
Homo sapiens (Human)
(5)
2a
TB-1uzjC07
C:3547-3588
2b
TB-1uzjC08
C:3547-3588
2c
TB-1uzjC09
C:3547-3588
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Asymmetric Unit 1
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