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1UZH
Asym. Unit
Info
Asym.Unit (827 KB)
Biol.Unit 1 (811 KB)
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(1)
Title
:
A CHIMERIC CHLAMYDOMONAS, SYNECHOCOCCUS RUBISCO ENZYME
Authors
:
S. Karkehabadi, R. J. Spreitzer, I. Andersson
Date
:
12 Mar 04 (Deposition) - 31 May 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,E,F,H,I,J,K,M,O,P,R,T,V,W
Biol. Unit 1: A,B,C,E,F,H,I,J,K,M,O,P,R,T,V,W (1x)
Keywords
:
Lyase, Rubisco, Photosynthesis, Carbon Dioxide Fixation, Photorespiration, Oxidoreductase, Monooxygenase, Chloroplast, Transit Peptide, Multigene Family
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Karkehabadi, S. R. Peddi, M. Anwaruzzaman, T. C. Taylor, A. Cederlund, T. Genkov, I. Andersson, R. J. Spreitzer
Chimeric Small Subunits Influence Catalysis Without Causing Global Conformational Changes In The Crystal Structure Of Ribulose-1, 5-Bisphosphate Carboxylase/Oxygenase
Biochemistry V. 44 9851 2005
[
close entry info
]
Hetero Components
(6, 106)
Info
All Hetero Components
1a: 2-CARBOXYARABINITOL-1,5-DIPHOSPHAT... (CAPa)
1b: 2-CARBOXYARABINITOL-1,5-DIPHOSPHAT... (CAPb)
1c: 2-CARBOXYARABINITOL-1,5-DIPHOSPHAT... (CAPc)
1d: 2-CARBOXYARABINITOL-1,5-DIPHOSPHAT... (CAPd)
1e: 2-CARBOXYARABINITOL-1,5-DIPHOSPHAT... (CAPe)
1f: 2-CARBOXYARABINITOL-1,5-DIPHOSPHAT... (CAPf)
1g: 2-CARBOXYARABINITOL-1,5-DIPHOSPHAT... (CAPg)
1h: 2-CARBOXYARABINITOL-1,5-DIPHOSPHAT... (CAPh)
2a: 1,2-ETHANEDIOL (EDOa)
2aa: 1,2-ETHANEDIOL (EDOaa)
2ab: 1,2-ETHANEDIOL (EDOab)
2ac: 1,2-ETHANEDIOL (EDOac)
2ad: 1,2-ETHANEDIOL (EDOad)
2ae: 1,2-ETHANEDIOL (EDOae)
2af: 1,2-ETHANEDIOL (EDOaf)
2ag: 1,2-ETHANEDIOL (EDOag)
2ah: 1,2-ETHANEDIOL (EDOah)
2ai: 1,2-ETHANEDIOL (EDOai)
2aj: 1,2-ETHANEDIOL (EDOaj)
2ak: 1,2-ETHANEDIOL (EDOak)
2al: 1,2-ETHANEDIOL (EDOal)
2am: 1,2-ETHANEDIOL (EDOam)
2an: 1,2-ETHANEDIOL (EDOan)
2ao: 1,2-ETHANEDIOL (EDOao)
2ap: 1,2-ETHANEDIOL (EDOap)
2aq: 1,2-ETHANEDIOL (EDOaq)
2ar: 1,2-ETHANEDIOL (EDOar)
2as: 1,2-ETHANEDIOL (EDOas)
2at: 1,2-ETHANEDIOL (EDOat)
2au: 1,2-ETHANEDIOL (EDOau)
2av: 1,2-ETHANEDIOL (EDOav)
2aw: 1,2-ETHANEDIOL (EDOaw)
2ax: 1,2-ETHANEDIOL (EDOax)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
2o: 1,2-ETHANEDIOL (EDOo)
2p: 1,2-ETHANEDIOL (EDOp)
2q: 1,2-ETHANEDIOL (EDOq)
2r: 1,2-ETHANEDIOL (EDOr)
2s: 1,2-ETHANEDIOL (EDOs)
2t: 1,2-ETHANEDIOL (EDOt)
2u: 1,2-ETHANEDIOL (EDOu)
2v: 1,2-ETHANEDIOL (EDOv)
2w: 1,2-ETHANEDIOL (EDOw)
2x: 1,2-ETHANEDIOL (EDOx)
2y: 1,2-ETHANEDIOL (EDOy)
2z: 1,2-ETHANEDIOL (EDOz)
3a: 4-HYDROXYPROLINE (HYPa)
3b: 4-HYDROXYPROLINE (HYPb)
3c: 4-HYDROXYPROLINE (HYPc)
3d: 4-HYDROXYPROLINE (HYPd)
3e: 4-HYDROXYPROLINE (HYPe)
3f: 4-HYDROXYPROLINE (HYPf)
3g: 4-HYDROXYPROLINE (HYPg)
3h: 4-HYDROXYPROLINE (HYPh)
3i: 4-HYDROXYPROLINE (HYPi)
3j: 4-HYDROXYPROLINE (HYPj)
3k: 4-HYDROXYPROLINE (HYPk)
3l: 4-HYDROXYPROLINE (HYPl)
3m: 4-HYDROXYPROLINE (HYPm)
3n: 4-HYDROXYPROLINE (HYPn)
3o: 4-HYDROXYPROLINE (HYPo)
3p: 4-HYDROXYPROLINE (HYPp)
4a: LYSINE NZ-CARBOXYLIC ACID (KCXa)
4b: LYSINE NZ-CARBOXYLIC ACID (KCXb)
4c: LYSINE NZ-CARBOXYLIC ACID (KCXc)
4d: LYSINE NZ-CARBOXYLIC ACID (KCXd)
4e: LYSINE NZ-CARBOXYLIC ACID (KCXe)
4f: LYSINE NZ-CARBOXYLIC ACID (KCXf)
4g: LYSINE NZ-CARBOXYLIC ACID (KCXg)
4h: LYSINE NZ-CARBOXYLIC ACID (KCXh)
5a: MAGNESIUM ION (MGa)
5b: MAGNESIUM ION (MGb)
5c: MAGNESIUM ION (MGc)
5d: MAGNESIUM ION (MGd)
5e: MAGNESIUM ION (MGe)
5f: MAGNESIUM ION (MGf)
5g: MAGNESIUM ION (MGg)
5h: MAGNESIUM ION (MGh)
6a: S-METHYLCYSTEINE (SMCa)
6b: S-METHYLCYSTEINE (SMCb)
6c: S-METHYLCYSTEINE (SMCc)
6d: S-METHYLCYSTEINE (SMCd)
6e: S-METHYLCYSTEINE (SMCe)
6f: S-METHYLCYSTEINE (SMCf)
6g: S-METHYLCYSTEINE (SMCg)
6h: S-METHYLCYSTEINE (SMCh)
6i: S-METHYLCYSTEINE (SMCi)
6j: S-METHYLCYSTEINE (SMCj)
6k: S-METHYLCYSTEINE (SMCk)
6l: S-METHYLCYSTEINE (SMCl)
6m: S-METHYLCYSTEINE (SMCm)
6n: S-METHYLCYSTEINE (SMCn)
6o: S-METHYLCYSTEINE (SMCo)
6p: S-METHYLCYSTEINE (SMCp)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CAP
8
Ligand/Ion
2-CARBOXYARABINITOL-1,5-DIPHOSPHATE
2
EDO
50
Ligand/Ion
1,2-ETHANEDIOL
3
HYP
16
Mod. Amino Acid
4-HYDROXYPROLINE
4
KCX
8
Mod. Amino Acid
LYSINE NZ-CARBOXYLIC ACID
5
MG
8
Ligand/Ion
MAGNESIUM ION
6
SMC
16
Mod. Amino Acid
S-METHYLCYSTEINE
[
close Hetero Component info
]
Sites
(66, 66)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
57: GC3 (SOFTWARE)
58: GC4 (SOFTWARE)
59: GC5 (SOFTWARE)
60: GC6 (SOFTWARE)
61: GC7 (SOFTWARE)
62: GC8 (SOFTWARE)
63: GC9 (SOFTWARE)
64: HC1 (SOFTWARE)
65: HC2 (SOFTWARE)
66: HC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
KCX A:201 , ASP A:203 , GLU A:204 , CAP A:477
BINDING SITE FOR RESIDUE MG A 476
02
AC2
SOFTWARE
LYS B:177 , KCX B:201 , ASP B:203 , GLU B:204 , CAP B:477
BINDING SITE FOR RESIDUE MG B 476
03
AC3
SOFTWARE
KCX E:201 , ASP E:203 , GLU E:204 , CAP E:477
BINDING SITE FOR RESIDUE MG E 476
04
AC4
SOFTWARE
LYS H:177 , KCX H:201 , ASP H:203 , GLU H:204 , CAP H:477
BINDING SITE FOR RESIDUE MG H 476
05
AC5
SOFTWARE
KCX K:201 , ASP K:203 , GLU K:204 , CAP K:477
BINDING SITE FOR RESIDUE MG K 476
06
AC6
SOFTWARE
KCX O:201 , ASP O:203 , GLU O:204 , CAP O:477
BINDING SITE FOR RESIDUE MG O 476
07
AC7
SOFTWARE
LYS R:177 , KCX R:201 , ASP R:203 , GLU R:204 , CAP R:477
BINDING SITE FOR RESIDUE MG R 476
08
AC8
SOFTWARE
KCX V:201 , ASP V:203 , GLU V:204 , CAP V:477
BINDING SITE FOR RESIDUE MG V 476
09
AC9
SOFTWARE
THR A:173 , LYS A:175 , LYS A:177 , KCX A:201 , ASP A:203 , GLU A:204 , HIS A:294 , ARG A:295 , HIS A:327 , LYS A:334 , LEU A:335 , SER A:379 , GLY A:380 , GLY A:381 , GLY A:403 , GLY A:404 , MG A:476 , HOH A:2119 , HOH A:2121 , HOH A:2188 , HOH A:2285 , HOH A:2286 , HOH A:2287 , HOH A:2288 , GLU B:60 , THR B:65 , TRP B:66 , ASN B:123 , HOH B:2096
BINDING SITE FOR RESIDUE CAP A 477
10
BC1
SOFTWARE
TYR A:24 , GLY A:64 , THR A:68 , VAL A:69 , ASP A:72 , HOH A:2045 , HOH A:2289 , HOH A:2290
BINDING SITE FOR RESIDUE EDO A1476
11
BC2
SOFTWARE
LYS A:18 , THR A:65 , TRP A:66 , THR A:67 , THR A:68 , HOH A:2290 , HOH A:2291
BINDING SITE FOR RESIDUE EDO A1477
12
BC3
SOFTWARE
GLU A:52 , HOH B:2315
BINDING SITE FOR RESIDUE EDO A1478
13
BC4
SOFTWARE
LYS A:466 , GLU A:468 , PHE A:469 , HOH B:2313
BINDING SITE FOR RESIDUE EDO A1479
14
BC5
SOFTWARE
ARG A:295 , ASP A:473 , HOH A:2292 , HOH A:2293 , HOH A:2294
BINDING SITE FOR RESIDUE EDO A1480
15
BC6
SOFTWARE
GLU A:60 , THR A:65 , TRP A:66 , ASN A:123 , HOH A:2043 , THR B:173 , LYS B:175 , LYS B:177 , KCX B:201 , ASP B:203 , GLU B:204 , HIS B:294 , ARG B:295 , HIS B:327 , LYS B:334 , LEU B:335 , SER B:379 , GLY B:380 , GLY B:381 , GLY B:403 , GLY B:404 , MG B:476 , HOH B:2129 , HOH B:2189 , HOH B:2243 , HOH B:2244 , HOH B:2305 , HOH B:2306 , HOH B:2307 , HOH B:2308
BINDING SITE FOR RESIDUE CAP B 477
16
BC7
SOFTWARE
LEU A:270 , LEU B:270 , HOH B:2180 , HOH B:2309
BINDING SITE FOR RESIDUE EDO B1476
17
BC8
SOFTWARE
TYR B:24 , GLY B:64 , THR B:68 , VAL B:69 , ASP B:72 , EDO B:1478 , HOH B:2052 , HOH B:2310 , HOH B:2311
BINDING SITE FOR RESIDUE EDO B1477
18
BC9
SOFTWARE
LYS B:18 , THR B:65 , TRP B:66 , THR B:67 , THR B:68 , EDO B:1477 , HOH B:2310 , HOH B:2312
BINDING SITE FOR RESIDUE EDO B1478
19
CC1
SOFTWARE
GLU B:52 , HOH B:2313
BINDING SITE FOR RESIDUE EDO B1479
20
CC2
SOFTWARE
LYS B:466 , PHE B:467 , GLU B:468 , PHE B:469 , HOH B:2315
BINDING SITE FOR RESIDUE EDO B1480
21
CC3
SOFTWARE
HIS B:298 , PHE B:311 , GLU B:336 , ASP B:473 , HOH B:2191 , HOH B:2208 , HOH B:2316 , HOH B:2317
BINDING SITE FOR RESIDUE EDO B1481
22
CC4
SOFTWARE
GLY C:37 , ILE C:39 , GLY C:64 , CYS C:65
BINDING SITE FOR RESIDUE EDO C1123
23
CC5
SOFTWARE
THR E:173 , LYS E:175 , LYS E:177 , KCX E:201 , ASP E:203 , GLU E:204 , HIS E:294 , ARG E:295 , HIS E:327 , LYS E:334 , LEU E:335 , SER E:379 , GLY E:380 , GLY E:381 , GLY E:403 , GLY E:404 , MG E:476 , HOH E:2112 , HOH E:2229 , HOH E:2238 , HOH E:2283 , HOH E:2284 , HOH E:2285 , HOH E:2286 , HOH E:2287 , GLU K:60 , THR K:65 , TRP K:66 , ASN K:123 , HOH K:2032
BINDING SITE FOR RESIDUE CAP E 477
24
CC6
SOFTWARE
TYR E:24 , THR E:68 , VAL E:69 , ASP E:72 , EDO E:1477 , HOH E:2037 , HOH E:2288 , HOH E:2289
BINDING SITE FOR RESIDUE EDO E1476
25
CC7
SOFTWARE
LYS E:18 , THR E:65 , TRP E:66 , THR E:67 , THR E:68 , EDO E:1476 , HOH E:2007 , HOH E:2289
BINDING SITE FOR RESIDUE EDO E1477
26
CC8
SOFTWARE
TYR E:20 , GLU E:52 , HOH K:2276
BINDING SITE FOR RESIDUE EDO E1478
27
CC9
SOFTWARE
LYS E:466 , GLU E:468 , PHE E:469 , HOH E:2290
BINDING SITE FOR RESIDUE EDO E1479
28
DC1
SOFTWARE
LEU E:270 , HOH E:2291 , HOH E:2292 , LEU K:270
BINDING SITE FOR RESIDUE EDO E1480
29
DC2
SOFTWARE
GLY F:37 , TRP F:38 , ILE F:39 , GLY F:64 , HOH F:2070
BINDING SITE FOR RESIDUE EDO F1123
30
DC3
SOFTWARE
THR H:173 , LYS H:175 , LYS H:177 , KCX H:201 , ASP H:203 , GLU H:204 , HIS H:294 , ARG H:295 , HIS H:327 , LYS H:334 , LEU H:335 , SER H:379 , GLY H:380 , GLY H:381 , GLY H:403 , GLY H:404 , MG H:476 , HOH H:2220 , HOH H:2236 , HOH H:2277 , HOH H:2278 , HOH H:2279 , HOH H:2280 , HOH H:2281 , GLU R:60 , THR R:65 , TRP R:66 , ASN R:123
BINDING SITE FOR RESIDUE CAP H 477
31
DC4
SOFTWARE
LEU H:270 , HOH H:2282 , HOH H:2283 , LEU R:270
BINDING SITE FOR RESIDUE EDO H1476
32
DC5
SOFTWARE
TYR H:24 , GLY H:64 , THR H:68 , VAL H:69 , ASP H:72 , LEU H:77 , HOH H:2042 , HOH H:2043 , HOH H:2284
BINDING SITE FOR RESIDUE EDO H1477
33
DC6
SOFTWARE
LYS H:18 , THR H:65 , TRP H:66 , THR H:67 , THR H:68 , HOH H:2017 , HOH H:2042
BINDING SITE FOR RESIDUE EDO H1478
34
DC7
SOFTWARE
TYR H:20 , GLU H:52 , HOH R:2307
BINDING SITE FOR RESIDUE EDO H1479
35
DC8
SOFTWARE
ARG B:439 , LYS H:466 , PHE H:467 , PHE H:469 , HOH H:2266 , HOH H:2286 , HOH H:2287 , EDO R:1478
BINDING SITE FOR RESIDUE EDO H1480
36
DC9
SOFTWARE
HIS H:298 , PHE H:311 , PHE H:345 , ASP H:473 , HOH H:2173 , HOH H:2274 , HOH H:2288
BINDING SITE FOR RESIDUE EDO H1481
37
EC1
SOFTWARE
GLY J:37 , TRP J:38 , ILE J:39 , GLY J:64 , CYS J:65
BINDING SITE FOR RESIDUE EDO J1123
38
EC2
SOFTWARE
GLU E:60 , THR E:65 , TRP E:66 , ASN E:123 , THR K:173 , LYS K:175 , LYS K:177 , KCX K:201 , ASP K:203 , GLU K:204 , HIS K:294 , ARG K:295 , HIS K:327 , LYS K:334 , LEU K:335 , SER K:379 , GLY K:380 , GLY K:381 , GLY K:403 , GLY K:404 , MG K:476 , HOH K:2111 , HOH K:2171 , HOH K:2268 , HOH K:2269 , HOH K:2270 , HOH K:2271 , HOH K:2272 , HOH K:2273
BINDING SITE FOR RESIDUE CAP K 477
39
EC3
SOFTWARE
TYR K:24 , THR K:68 , VAL K:69 , ASP K:72 , EDO K:1477 , HOH K:2034 , HOH K:2037 , HOH K:2042
BINDING SITE FOR RESIDUE EDO K1476
40
EC4
SOFTWARE
LYS K:18 , THR K:65 , TRP K:66 , THR K:67 , THR K:68 , EDO K:1476 , HOH K:2034 , HOH K:2274
BINDING SITE FOR RESIDUE EDO K1477
41
EC5
SOFTWARE
HOH E:2290 , GLU K:52 , HOH K:2275
BINDING SITE FOR RESIDUE EDO K1478
42
EC6
SOFTWARE
LYS K:466 , PHE K:467 , GLU K:468 , PHE K:469 , HOH K:2276
BINDING SITE FOR RESIDUE EDO K1479
43
EC7
SOFTWARE
HIS K:298 , PHE K:311 , GLU K:336 , ASP K:473 , HOH K:2277 , HOH K:2278 , HOH K:2279
BINDING SITE FOR RESIDUE EDO K1480
44
EC8
SOFTWARE
GLY M:37 , TRP M:38 , GLY M:64 , CYS M:65
BINDING SITE FOR RESIDUE EDO M1123
45
EC9
SOFTWARE
THR O:173 , LYS O:175 , LYS O:177 , KCX O:201 , ASP O:203 , GLU O:204 , HIS O:294 , ARG O:295 , HIS O:327 , LYS O:334 , LEU O:335 , SER O:379 , GLY O:380 , GLY O:381 , GLY O:403 , GLY O:404 , MG O:476 , HOH O:2230 , HOH O:2279 , HOH O:2280 , HOH O:2281 , HOH O:2282 , HOH O:2283 , GLU V:60 , THR V:65 , TRP V:66 , ASN V:123 , HOH V:2079
BINDING SITE FOR RESIDUE CAP O 477
46
FC1
SOFTWARE
TYR O:24 , THR O:68 , VAL O:69 , ASP O:72 , EDO O:1477 , HOH O:2032 , HOH O:2039 , HOH O:2284
BINDING SITE FOR RESIDUE EDO O1476
47
FC2
SOFTWARE
LYS O:18 , THR O:65 , TRP O:66 , THR O:67 , THR O:68 , EDO O:1476 , HOH O:2284 , HOH O:2285
BINDING SITE FOR RESIDUE EDO O1477
48
FC3
SOFTWARE
GLU O:52 , HOH V:2281
BINDING SITE FOR RESIDUE EDO O1478
49
FC4
SOFTWARE
LYS O:466 , GLU O:468 , PHE O:469 , HOH O:2286
BINDING SITE FOR RESIDUE EDO O1479
50
FC5
SOFTWARE
ARG O:295 , SER O:328 , GLU O:336 , ASP O:473 , HOH O:2193 , HOH O:2201
BINDING SITE FOR RESIDUE EDO O1480
51
FC6
SOFTWARE
GLY P:37 , TRP P:38 , ILE P:39 , PHE P:63 , GLY P:64 , CYS P:65
BINDING SITE FOR RESIDUE EDO P1123
52
FC7
SOFTWARE
GLU H:60 , THR H:65 , TRP H:66 , ASN H:123 , HOH H:2084 , THR R:173 , LYS R:175 , LYS R:177 , KCX R:201 , ASP R:203 , GLU R:204 , HIS R:294 , ARG R:295 , HIS R:327 , LYS R:334 , LEU R:335 , SER R:379 , GLY R:380 , GLY R:381 , GLY R:403 , GLY R:404 , MG R:476 , HOH R:2297 , HOH R:2298 , HOH R:2299 , HOH R:2300 , HOH R:2301 , HOH R:2302 , HOH R:2303
BINDING SITE FOR RESIDUE CAP R 477
53
FC8
SOFTWARE
TYR R:24 , THR R:68 , VAL R:69 , ASP R:72 , HOH R:2045 , HOH R:2304 , HOH R:2305
BINDING SITE FOR RESIDUE EDO R1476
54
FC9
SOFTWARE
LYS R:18 , THR R:65 , TRP R:66 , THR R:67 , THR R:68 , HOH R:2016 , HOH R:2045
BINDING SITE FOR RESIDUE EDO R1477
55
GC1
SOFTWARE
EDO H:1480 , GLU R:52
BINDING SITE FOR RESIDUE EDO R1478
56
GC2
SOFTWARE
LYS R:466 , PHE R:467 , GLU R:468 , PHE R:469 , HOH R:2306 , HOH R:2307
BINDING SITE FOR RESIDUE EDO R1479
57
GC3
SOFTWARE
HIS R:298 , PHE R:345 , ASP R:473 , HOH R:2195 , HOH R:2197 , HOH R:2214
BINDING SITE FOR RESIDUE EDO R1480
58
GC4
SOFTWARE
GLY T:37 , TRP T:38 , ILE T:39 , GLY T:64 , CYS T:65 , HOH T:2072 , HOH T:2073
BINDING SITE FOR RESIDUE EDO T1123
59
GC5
SOFTWARE
GLU O:60 , THR O:65 , TRP O:66 , ASN O:123 , HOH O:2029 , THR V:173 , LYS V:175 , LYS V:177 , KCX V:201 , ASP V:203 , GLU V:204 , HIS V:294 , ARG V:295 , HIS V:327 , LYS V:334 , LEU V:335 , SER V:379 , GLY V:380 , GLY V:381 , GLY V:403 , GLY V:404 , MG V:476 , HOH V:2107 , HOH V:2176 , HOH V:2223 , HOH V:2224 , HOH V:2274 , HOH V:2275 , HOH V:2276
BINDING SITE FOR RESIDUE CAP V 477
60
GC6
SOFTWARE
LEU O:270 , LEU V:270 , HOH V:2277 , HOH V:2278
BINDING SITE FOR RESIDUE EDO V1476
61
GC7
SOFTWARE
TYR V:24 , THR V:68 , VAL V:69 , ASP V:72 , EDO V:1478 , HOH V:2040 , HOH V:2279 , HOH V:2280
BINDING SITE FOR RESIDUE EDO V1477
62
GC8
SOFTWARE
VAL V:17 , LYS V:18 , THR V:65 , TRP V:66 , THR V:67 , THR V:68 , EDO V:1477 , HOH V:2016 , HOH V:2280
BINDING SITE FOR RESIDUE EDO V1478
63
GC9
SOFTWARE
HOH O:2286 , GLU V:52 , HOH V:2007
BINDING SITE FOR RESIDUE EDO V1479
64
HC1
SOFTWARE
ARG E:439 , LYS V:466 , PHE V:467 , GLU V:468 , PHE V:469 , HOH V:2281
BINDING SITE FOR RESIDUE EDO V1480
65
HC2
SOFTWARE
ARG V:295 , SER V:328 , GLU V:336 , ASP V:473 , HOH V:2187
BINDING SITE FOR RESIDUE EDO V1481
66
HC3
SOFTWARE
GLY W:37 , TRP W:38 , ILE W:39 , PHE W:63 , GLY W:64 , CYS W:65
BINDING SITE FOR RESIDUE EDO W1123
[
close Site info
]
SAPs(SNPs)/Variants
(1, 8)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_RBL_CHLRE_001 (P46P, chain A/B/E/H/K/O/R/V, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_RBL_CHLRE_001
*
L
46
P
RBL_CHLRE
---
---
A/B/E/H/K/O/R/V
P
46
P
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 8)
Info
All PROSITE Patterns/Profiles
1: RUBISCO_LARGE (A:196-204,B:196-204,E:196-204,H:19...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RUBISCO_LARGE
PS00157
Ribulose bisphosphate carboxylase large chain active site.
RBL_CHLRE
196-204
8
A:196-204
B:196-204
E:196-204
H:196-204
K:196-204
O:196-204
R:196-204
V:196-204
[
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]
Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 24)
Info
All SCOP Domains
1a: SCOP_d1uzha2 (A:11-149)
1b: SCOP_d1uzhb2 (B:9-149)
1c: SCOP_d1uzhe2 (E:7-149)
1d: SCOP_d1uzhh2 (H:7-149)
1e: SCOP_d1uzhk2 (K:7-149)
1f: SCOP_d1uzho2 (O:7-149)
1g: SCOP_d1uzhr2 (R:7-149)
1h: SCOP_d1uzhv2 (V:7-149)
2a: SCOP_d1uzhc1 (C:1-122)
2b: SCOP_d1uzhf_ (F:)
2c: SCOP_d1uzhi_ (I:)
2d: SCOP_d1uzhj_ (J:)
2e: SCOP_d1uzhm_ (M:)
2f: SCOP_d1uzhp_ (P:)
2g: SCOP_d1uzht_ (T:)
2h: SCOP_d1uzhw_ (W:)
3a: SCOP_d1uzha1 (A:150-475)
3b: SCOP_d1uzhb1 (B:150-475)
3c: SCOP_d1uzhe1 (E:150-475)
3d: SCOP_d1uzhh1 (H:150-475)
3e: SCOP_d1uzhk1 (K:150-475)
3f: SCOP_d1uzho1 (O:150-475)
3g: SCOP_d1uzhr1 (R:150-475)
3h: SCOP_d1uzhv1 (V:150-475)
View:
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Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
RuBisCO, large subunit, small (N-terminal) domain
(66)
Family
:
Ribulose 1,5-bisphosphate carboxylase-oxygenase
(39)
Protein domain
:
Ribulose 1,5-bisphosphate carboxylase-oxygenase
(39)
Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]
(4)
1a
d1uzha2
A:11-149
1b
d1uzhb2
B:9-149
1c
d1uzhe2
E:7-149
1d
d1uzhh2
H:7-149
1e
d1uzhk2
K:7-149
1f
d1uzho2
O:7-149
1g
d1uzhr2
R:7-149
1h
d1uzhv2
V:7-149
Fold
:
RuBisCO, small subunit
(44)
Superfamily
:
RuBisCO, small subunit
(44)
Family
:
RuBisCO, small subunit
(44)
Protein domain
:
Ribulose 1,5-bisphosphate carboxylase-oxygenase
(28)
Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]
(6)
2a
d1uzhc1
C:1-122
2b
d1uzhf_
F:
2c
d1uzhi_
I:
2d
d1uzhj_
J:
2e
d1uzhm_
M:
2f
d1uzhp_
P:
2g
d1uzht_
T:
2h
d1uzhw_
W:
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
RuBisCo, C-terminal domain
(66)
Family
:
RuBisCo, large subunit, C-terminal domain
(56)
Protein domain
:
Ribulose 1,5-bisphosphate carboxylase-oxygenase
(40)
Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]
(4)
3a
d1uzha1
A:150-475
3b
d1uzhb1
B:150-475
3c
d1uzhe1
E:150-475
3d
d1uzhh1
H:150-475
3e
d1uzhk1
K:150-475
3f
d1uzho1
O:150-475
3g
d1uzhr1
R:150-475
3h
d1uzhv1
V:150-475
[
close SCOP info
]
CATH Domains
(3, 24)
Info
all CATH domains
1a: CATH_1uzhA01 (A:22-148)
1b: CATH_1uzhB01 (B:22-148)
1c: CATH_1uzhE01 (E:22-148)
1d: CATH_1uzhH01 (H:22-148)
1e: CATH_1uzhK01 (K:22-148)
1f: CATH_1uzhO01 (O:22-148)
1g: CATH_1uzhR01 (R:22-148)
1h: CATH_1uzhV01 (V:22-148)
2a: CATH_1uzhC00 (C:1-122)
2b: CATH_1uzhF00 (F:1-122)
2c: CATH_1uzhI00 (I:1-122)
2d: CATH_1uzhJ00 (J:1-122)
2e: CATH_1uzhM00 (M:1-122)
2f: CATH_1uzhP00 (P:1-122)
2g: CATH_1uzhT00 (T:1-122)
2h: CATH_1uzhW00 (W:1-122)
3a: CATH_1uzhA02 (A:149-462)
3b: CATH_1uzhB02 (B:149-462)
3c: CATH_1uzhE02 (E:149-462)
3d: CATH_1uzhH02 (H:149-462)
3e: CATH_1uzhK02 (K:149-462)
3f: CATH_1uzhO02 (O:149-462)
3g: CATH_1uzhR02 (R:149-462)
3h: CATH_1uzhV02 (V:149-462)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.150, no name defined]
(49)
Chlamydomonas reinhardtii. Organism_taxid: 3055.
(5)
1a
1uzhA01
A:22-148
1b
1uzhB01
B:22-148
1c
1uzhE01
E:22-148
1d
1uzhH01
H:22-148
1e
1uzhK01
K:22-148
1f
1uzhO01
O:22-148
1g
1uzhR01
R:22-148
1h
1uzhV01
V:22-148
Topology
:
Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase
(42)
Homologous Superfamily
:
[code=3.30.190.10, no name defined]
(35)
Chlamydomonas reinhardtii. Organism_taxid: 3055.
(5)
2a
1uzhC00
C:1-122
2b
1uzhF00
F:1-122
2c
1uzhI00
I:1-122
2d
1uzhJ00
J:1-122
2e
1uzhM00
M:1-122
2f
1uzhP00
P:1-122
2g
1uzhT00
T:1-122
2h
1uzhW00
W:1-122
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Rubisco
(49)
Chlamydomonas reinhardtii. Organism_taxid: 3055.
(5)
3a
1uzhA02
A:149-462
3b
1uzhB02
B:149-462
3c
1uzhE02
E:149-462
3d
1uzhH02
H:149-462
3e
1uzhK02
K:149-462
3f
1uzhO02
O:149-462
3g
1uzhR02
R:149-462
3h
1uzhV02
V:149-462
[
close CATH info
]
Pfam Domains
(3, 24)
Info
all PFAM domains
1a: PFAM_RuBisCO_large_1uzhV01 (V:154-462)
1b: PFAM_RuBisCO_large_1uzhV02 (V:154-462)
1c: PFAM_RuBisCO_large_1uzhV03 (V:154-462)
1d: PFAM_RuBisCO_large_1uzhV04 (V:154-462)
1e: PFAM_RuBisCO_large_1uzhV05 (V:154-462)
1f: PFAM_RuBisCO_large_1uzhV06 (V:154-462)
1g: PFAM_RuBisCO_large_1uzhV07 (V:154-462)
1h: PFAM_RuBisCO_large_1uzhV08 (V:154-462)
2a: PFAM_RuBisCO_large_N_1uzhV09 (V:21-146)
2b: PFAM_RuBisCO_large_N_1uzhV10 (V:21-146)
2c: PFAM_RuBisCO_large_N_1uzhV11 (V:21-146)
2d: PFAM_RuBisCO_large_N_1uzhV12 (V:21-146)
2e: PFAM_RuBisCO_large_N_1uzhV13 (V:21-146)
2f: PFAM_RuBisCO_large_N_1uzhV14 (V:21-146)
2g: PFAM_RuBisCO_large_N_1uzhV15 (V:21-146)
2h: PFAM_RuBisCO_large_N_1uzhV16 (V:21-146)
3a: PFAM_RuBisCO_small_1uzhW01 (W:11-109)
3b: PFAM_RuBisCO_small_1uzhW02 (W:11-109)
3c: PFAM_RuBisCO_small_1uzhW03 (W:11-109)
3d: PFAM_RuBisCO_small_1uzhW04 (W:11-109)
3e: PFAM_RuBisCO_small_1uzhW05 (W:11-109)
3f: PFAM_RuBisCO_small_1uzhW06 (W:11-109)
3g: PFAM_RuBisCO_small_1uzhW07 (W:11-109)
3h: PFAM_RuBisCO_small_1uzhW08 (W:11-109)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: RuBisCO_large]
(36)
Family
:
RuBisCO_large
(36)
Chlamydomonas reinhardtii (Chlamydomonas smithii)
(10)
1a
RuBisCO_large-1uzhV01
V:154-462
1b
RuBisCO_large-1uzhV02
V:154-462
1c
RuBisCO_large-1uzhV03
V:154-462
1d
RuBisCO_large-1uzhV04
V:154-462
1e
RuBisCO_large-1uzhV05
V:154-462
1f
RuBisCO_large-1uzhV06
V:154-462
1g
RuBisCO_large-1uzhV07
V:154-462
1h
RuBisCO_large-1uzhV08
V:154-462
Clan
:
no clan defined [family: RuBisCO_large_N]
(27)
Family
:
RuBisCO_large_N
(27)
Chlamydomonas reinhardtii (Chlamydomonas smithii)
(10)
2a
RuBisCO_large_N-1uzhV09
V:21-146
2b
RuBisCO_large_N-1uzhV10
V:21-146
2c
RuBisCO_large_N-1uzhV11
V:21-146
2d
RuBisCO_large_N-1uzhV12
V:21-146
2e
RuBisCO_large_N-1uzhV13
V:21-146
2f
RuBisCO_large_N-1uzhV14
V:21-146
2g
RuBisCO_large_N-1uzhV15
V:21-146
2h
RuBisCO_large_N-1uzhV16
V:21-146
Clan
:
no clan defined [family: RuBisCO_small]
(23)
Family
:
RuBisCO_small
(23)
Chlamydomonas reinhardtii (Chlamydomonas smithii)
(10)
3a
RuBisCO_small-1uzhW01
W:11-109
3b
RuBisCO_small-1uzhW02
W:11-109
3c
RuBisCO_small-1uzhW03
W:11-109
3d
RuBisCO_small-1uzhW04
W:11-109
3e
RuBisCO_small-1uzhW05
W:11-109
3f
RuBisCO_small-1uzhW06
W:11-109
3g
RuBisCO_small-1uzhW07
W:11-109
3h
RuBisCO_small-1uzhW08
W:11-109
[
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