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1UZG
Biol. Unit 1
Info
Asym.Unit (137 KB)
Biol.Unit 1 (129 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE DENGUE TYPE 3 VIRUS ENVELOPE PROTEIN
Authors
:
Y. Modis, S. C. Harrison
Date
:
11 Mar 04 (Deposition) - 15 Mar 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Viral Protein, Membrane Fusion, Flavivirus, Fusion Loop, Class 2 Fusion Protein, Glycoprotein, Envelope Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Modis, S. Ogata, D. Clements, S. C. Harrison
Variable Surface Epitopes In The Crystal Structure Of Dengue Virus Type 3 Envelope Glycoprotein
J. Virol. V. 79 1223 2005
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(4, 13)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
2a: BETA-L-FUCOSE (FULa)
2b: BETA-L-FUCOSE (FULb)
2c: BETA-L-FUCOSE (FULc)
3a: ALPHA-D-MANNOSE (MANa)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
3
Ligand/Ion
BETA-D-MANNOSE
2
FUL
3
Ligand/Ion
BETA-L-FUCOSE
3
MAN
1
Ligand/Ion
ALPHA-D-MANNOSE
4
NAG
6
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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]
Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:67 , TYR A:90 , LYS A:118 , FUL A:1394
BINDING SITE FOR RESIDUE NAG A1393
02
AC2
SOFTWARE
NAG A:1393
BINDING SITE FOR RESIDUE FUL A1394
03
AC3
SOFTWARE
HIS A:149 , ASN A:153 , NAG A:1396 , FUL A:1397
BINDING SITE FOR RESIDUE NAG A1395
04
AC4
SOFTWARE
NAG A:1395 , BMA A:1398
BINDING SITE FOR RESIDUE NAG A1396
05
AC5
SOFTWARE
SER A:16 , GLY A:17 , NAG A:1396 , BMA A:1399 , BMA A:1400
BINDING SITE FOR RESIDUE BMA A1398
06
AC6
SOFTWARE
SER A:16 , LYS A:36 , BMA A:1398
BINDING SITE FOR RESIDUE BMA A1399
07
AC7
SOFTWARE
ASP A:147 , HIS A:149 , NAG A:1395
BINDING SITE FOR RESIDUE FUL A1397
08
AC8
SOFTWARE
BMA A:1398
BINDING SITE FOR RESIDUE BMA A1400
09
AC9
SOFTWARE
ASN B:67 , TYR B:90 , LYS B:118
BINDING SITE FOR RESIDUE NAG B1393
10
BC1
SOFTWARE
GLY A:102 , ASN B:153 , NAG B:1395 , FUL B:1396
BINDING SITE FOR RESIDUE NAG B1394
11
BC2
SOFTWARE
NAG B:1394 , FUL B:1396 , MAN B:1397
BINDING SITE FOR RESIDUE NAG B1395
12
BC3
SOFTWARE
NAG B:1395
BINDING SITE FOR RESIDUE MAN B1397
13
BC4
SOFTWARE
ASP B:147 , NAG B:1394 , NAG B:1395
BINDING SITE FOR RESIDUE FUL B1396
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(4, 8)
Info
all CATH domains
1a: CATH_1uzgA02 (A:52-63,A:122-130,A:189-229,A:251-265)
1b: CATH_1uzgB02 (B:52-63,B:122-130,B:189-229,B:251-265)
2a: CATH_1uzgA03 (A:64-121,A:230-250)
2b: CATH_1uzgB03 (B:64-121,B:230-250)
3a: CATH_1uzgA04 (A:293-392)
3b: CATH_1uzgB04 (B:293-392)
4a: CATH_1uzgA01 (A:1-51,A:131-188,A:266-292)
4b: CATH_1uzgB01 (B:1-51,B:131-188,B:266-292)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Viral Envelope Glycoprotein; domain 2
(12)
Homologous Superfamily
:
Viral Envelope Glycoprotein, domain 2
(12)
Dengue virus type 3. Organism_taxid: 11069. Cell_line: drosophila schneider 2.
(1)
1a
1uzgA02
A:52-63,A:122-130,A:189-229,A:251-265
1b
1uzgB02
B:52-63,B:122-130,B:189-229,B:251-265
Topology
:
Viral Envelope Glycoprotein; domain 3
(12)
Homologous Superfamily
:
Viral Envelope Glycoprotein, domain 3
(12)
Dengue virus type 3. Organism_taxid: 11069. Cell_line: drosophila schneider 2.
(1)
2a
1uzgA03
A:64-121,A:230-250
2b
1uzgB03
B:64-121,B:230-250
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.350, no name defined]
(26)
Dengue virus type 3. Organism_taxid: 11069. Cell_line: drosophila schneider 2.
(1)
3a
1uzgA04
A:293-392
3b
1uzgB04
B:293-392
Topology
:
Tick-borne Encephalitis virus Glycoprotein; domain 1
(14)
Homologous Superfamily
:
Tick-borne Encephalitis virus Glycoprotein, domain 1
(14)
Dengue virus type 3. Organism_taxid: 11069. Cell_line: drosophila schneider 2.
(1)
4a
1uzgA01
A:1-51,A:131-188,A:266-292
4b
1uzgB01
B:1-51,B:131-188,B:266-292
[
close CATH info
]
Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Flavi_glycop_C_1uzgB01 (B:296-391)
1b: PFAM_Flavi_glycop_C_1uzgB02 (B:296-391)
2a: PFAM_Flavi_glycoprot_1uzgB03 (B:1-294)
2b: PFAM_Flavi_glycoprot_1uzgB04 (B:1-294)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Flavi_glycop_C]
(15)
Family
:
Flavi_glycop_C
(15)
Dengue virus type 3 (strain Philippines/H87/1956) (DENV-3)
(1)
1a
Flavi_glycop_C-1uzgB01
B:296-391
1b
Flavi_glycop_C-1uzgB02
B:296-391
Clan
:
no clan defined [family: Flavi_glycoprot]
(10)
Family
:
Flavi_glycoprot
(10)
Dengue virus type 3 (strain Philippines/H87/1956) (DENV-3)
(1)
2a
Flavi_glycoprot-1uzgB03
B:1-294
2b
Flavi_glycoprot-1uzgB04
B:1-294
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Asymmetric Unit 1
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