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1UZD
Asym. Unit
Info
Asym.Unit (816 KB)
Biol.Unit 1 (801 KB)
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(1)
Title
:
CHLAMYDOMONAS,SPINACH CHIMERIC RUBISCO
Authors
:
S. Karkehabadi, R. J. Spreitzer, I. Andersson
Date
:
11 Mar 04 (Deposition) - 31 May 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,E,F,H,I,J,K,M,O,P,R,T,V,W
Biol. Unit 1: A,B,C,E,F,H,I,J,K,M,O,P,R,T,V,W (1x)
Keywords
:
Lyase, Rubisco, Photosynthesis, Carbon Dioxide Fixation, Photorespiration, Oxidoreductase, Monooxygenase, Chloroplast, Transit Peptide, Multigene Family
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Karkehabadi, S. R. Peddi, M. Anwaruzzaman, T. C. Taylor, A. Cederlund, T. Genkov, I. Andersson, R. J. Spreitzer
Chimeric Small Subunits Influence Catalysis Without Causing Global Conformational Changes In The Crystal Structure Of Ribulose-1, 5-Bisphosphate Carboxylase/Oxygenase
Biochemistry V. 44 9851 2005
[
close entry info
]
Hetero Components
(6, 110)
Info
All Hetero Components
1a: 2-CARBOXYARABINITOL-1,5-DIPHOSPHAT... (CAPa)
1b: 2-CARBOXYARABINITOL-1,5-DIPHOSPHAT... (CAPb)
1c: 2-CARBOXYARABINITOL-1,5-DIPHOSPHAT... (CAPc)
1d: 2-CARBOXYARABINITOL-1,5-DIPHOSPHAT... (CAPd)
1e: 2-CARBOXYARABINITOL-1,5-DIPHOSPHAT... (CAPe)
1f: 2-CARBOXYARABINITOL-1,5-DIPHOSPHAT... (CAPf)
1g: 2-CARBOXYARABINITOL-1,5-DIPHOSPHAT... (CAPg)
1h: 2-CARBOXYARABINITOL-1,5-DIPHOSPHAT... (CAPh)
2a: 1,2-ETHANEDIOL (EDOa)
2aa: 1,2-ETHANEDIOL (EDOaa)
2ab: 1,2-ETHANEDIOL (EDOab)
2ac: 1,2-ETHANEDIOL (EDOac)
2ad: 1,2-ETHANEDIOL (EDOad)
2ae: 1,2-ETHANEDIOL (EDOae)
2af: 1,2-ETHANEDIOL (EDOaf)
2ag: 1,2-ETHANEDIOL (EDOag)
2ah: 1,2-ETHANEDIOL (EDOah)
2ai: 1,2-ETHANEDIOL (EDOai)
2aj: 1,2-ETHANEDIOL (EDOaj)
2ak: 1,2-ETHANEDIOL (EDOak)
2al: 1,2-ETHANEDIOL (EDOal)
2am: 1,2-ETHANEDIOL (EDOam)
2an: 1,2-ETHANEDIOL (EDOan)
2ao: 1,2-ETHANEDIOL (EDOao)
2ap: 1,2-ETHANEDIOL (EDOap)
2aq: 1,2-ETHANEDIOL (EDOaq)
2ar: 1,2-ETHANEDIOL (EDOar)
2as: 1,2-ETHANEDIOL (EDOas)
2at: 1,2-ETHANEDIOL (EDOat)
2au: 1,2-ETHANEDIOL (EDOau)
2av: 1,2-ETHANEDIOL (EDOav)
2aw: 1,2-ETHANEDIOL (EDOaw)
2ax: 1,2-ETHANEDIOL (EDOax)
2ay: 1,2-ETHANEDIOL (EDOay)
2az: 1,2-ETHANEDIOL (EDOaz)
2b: 1,2-ETHANEDIOL (EDOb)
2ba: 1,2-ETHANEDIOL (EDOba)
2bb: 1,2-ETHANEDIOL (EDObb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
2o: 1,2-ETHANEDIOL (EDOo)
2p: 1,2-ETHANEDIOL (EDOp)
2q: 1,2-ETHANEDIOL (EDOq)
2r: 1,2-ETHANEDIOL (EDOr)
2s: 1,2-ETHANEDIOL (EDOs)
2t: 1,2-ETHANEDIOL (EDOt)
2u: 1,2-ETHANEDIOL (EDOu)
2v: 1,2-ETHANEDIOL (EDOv)
2w: 1,2-ETHANEDIOL (EDOw)
2x: 1,2-ETHANEDIOL (EDOx)
2y: 1,2-ETHANEDIOL (EDOy)
2z: 1,2-ETHANEDIOL (EDOz)
3a: 4-HYDROXYPROLINE (HYPa)
3b: 4-HYDROXYPROLINE (HYPb)
3c: 4-HYDROXYPROLINE (HYPc)
3d: 4-HYDROXYPROLINE (HYPd)
3e: 4-HYDROXYPROLINE (HYPe)
3f: 4-HYDROXYPROLINE (HYPf)
3g: 4-HYDROXYPROLINE (HYPg)
3h: 4-HYDROXYPROLINE (HYPh)
3i: 4-HYDROXYPROLINE (HYPi)
3j: 4-HYDROXYPROLINE (HYPj)
3k: 4-HYDROXYPROLINE (HYPk)
3l: 4-HYDROXYPROLINE (HYPl)
3m: 4-HYDROXYPROLINE (HYPm)
3n: 4-HYDROXYPROLINE (HYPn)
3o: 4-HYDROXYPROLINE (HYPo)
3p: 4-HYDROXYPROLINE (HYPp)
4a: LYSINE NZ-CARBOXYLIC ACID (KCXa)
4b: LYSINE NZ-CARBOXYLIC ACID (KCXb)
4c: LYSINE NZ-CARBOXYLIC ACID (KCXc)
4d: LYSINE NZ-CARBOXYLIC ACID (KCXd)
4e: LYSINE NZ-CARBOXYLIC ACID (KCXe)
4f: LYSINE NZ-CARBOXYLIC ACID (KCXf)
4g: LYSINE NZ-CARBOXYLIC ACID (KCXg)
4h: LYSINE NZ-CARBOXYLIC ACID (KCXh)
5a: MAGNESIUM ION (MGa)
5b: MAGNESIUM ION (MGb)
5c: MAGNESIUM ION (MGc)
5d: MAGNESIUM ION (MGd)
5e: MAGNESIUM ION (MGe)
5f: MAGNESIUM ION (MGf)
5g: MAGNESIUM ION (MGg)
5h: MAGNESIUM ION (MGh)
6a: S-METHYLCYSTEINE (SMCa)
6b: S-METHYLCYSTEINE (SMCb)
6c: S-METHYLCYSTEINE (SMCc)
6d: S-METHYLCYSTEINE (SMCd)
6e: S-METHYLCYSTEINE (SMCe)
6f: S-METHYLCYSTEINE (SMCf)
6g: S-METHYLCYSTEINE (SMCg)
6h: S-METHYLCYSTEINE (SMCh)
6i: S-METHYLCYSTEINE (SMCi)
6j: S-METHYLCYSTEINE (SMCj)
6k: S-METHYLCYSTEINE (SMCk)
6l: S-METHYLCYSTEINE (SMCl)
6m: S-METHYLCYSTEINE (SMCm)
6n: S-METHYLCYSTEINE (SMCn)
6o: S-METHYLCYSTEINE (SMCo)
6p: S-METHYLCYSTEINE (SMCp)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CAP
8
Ligand/Ion
2-CARBOXYARABINITOL-1,5-DIPHOSPHATE
2
EDO
54
Ligand/Ion
1,2-ETHANEDIOL
3
HYP
16
Mod. Amino Acid
4-HYDROXYPROLINE
4
KCX
8
Mod. Amino Acid
LYSINE NZ-CARBOXYLIC ACID
5
MG
8
Ligand/Ion
MAGNESIUM ION
6
SMC
16
Mod. Amino Acid
S-METHYLCYSTEINE
[
close Hetero Component info
]
Sites
(70, 70)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
57: GC3 (SOFTWARE)
58: GC4 (SOFTWARE)
59: GC5 (SOFTWARE)
60: GC6 (SOFTWARE)
61: GC7 (SOFTWARE)
62: GC8 (SOFTWARE)
63: GC9 (SOFTWARE)
64: HC1 (SOFTWARE)
65: HC2 (SOFTWARE)
66: HC3 (SOFTWARE)
67: HC4 (SOFTWARE)
68: HC5 (SOFTWARE)
69: HC6 (SOFTWARE)
70: HC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:177 , KCX A:201 , ASP A:203 , GLU A:204 , CAP A:1477
BINDING SITE FOR RESIDUE MG A1476
02
AC2
SOFTWARE
KCX B:201 , ASP B:203 , GLU B:204 , CAP B:1477
BINDING SITE FOR RESIDUE MG B1476
03
AC3
SOFTWARE
LYS E:177 , KCX E:201 , ASP E:203 , GLU E:204 , CAP E:1477
BINDING SITE FOR RESIDUE MG E1476
04
AC4
SOFTWARE
LYS H:177 , KCX H:201 , ASP H:203 , GLU H:204 , CAP H:1477
BINDING SITE FOR RESIDUE MG H1476
05
AC5
SOFTWARE
KCX K:201 , ASP K:203 , GLU K:204 , CAP K:1477
BINDING SITE FOR RESIDUE MG K1476
06
AC6
SOFTWARE
LYS O:177 , KCX O:201 , ASP O:203 , GLU O:204 , CAP O:1477
BINDING SITE FOR RESIDUE MG O1476
07
AC7
SOFTWARE
LYS R:177 , KCX R:201 , ASP R:203 , GLU R:204 , CAP R:1477
BINDING SITE FOR RESIDUE MG R1476
08
AC8
SOFTWARE
LYS V:177 , KCX V:201 , ASP V:203 , GLU V:204 , CAP V:1477
BINDING SITE FOR RESIDUE MG V1476
09
AC9
SOFTWARE
THR A:173 , LYS A:175 , LYS A:177 , KCX A:201 , ASP A:203 , GLU A:204 , HIS A:294 , ARG A:295 , HIS A:327 , LYS A:334 , LEU A:335 , SER A:379 , GLY A:380 , GLY A:381 , GLY A:403 , GLY A:404 , MG A:1476 , HOH A:2103 , HOH A:2134 , HOH A:2135 , HOH A:2143 , HOH A:2172 , HOH A:2173 , HOH A:2174 , GLU B:60 , THR B:65 , TRP B:66 , ASN B:123 , HOH B:2028
BINDING SITE FOR RESIDUE CAP A1477
10
BC1
SOFTWARE
TYR A:24 , THR A:68 , VAL A:69 , ASP A:72 , EDO A:1479 , HOH A:2024 , HOH A:2175
BINDING SITE FOR RESIDUE EDO A1478
11
BC2
SOFTWARE
VAL A:17 , LYS A:18 , THR A:65 , TRP A:66 , THR A:67 , THR A:68 , EDO A:1478 , HOH A:2004 , HOH A:2175
BINDING SITE FOR RESIDUE EDO A1479
12
BC3
SOFTWARE
TYR A:20 , GLU A:52
BINDING SITE FOR RESIDUE EDO A1480
13
BC4
SOFTWARE
LYS A:466 , GLU A:468 , PHE A:469 , HOH B:2200
BINDING SITE FOR RESIDUE EDO A1481
14
BC5
SOFTWARE
ASP A:302 , GLU A:336 , ASP A:473 , HOH A:2177
BINDING SITE FOR RESIDUE EDO A1482
15
BC6
SOFTWARE
LEU A:270 , HOH A:2178 , LEU B:270 , HOH B:2111
BINDING SITE FOR RESIDUE EDO A1483
16
BC7
SOFTWARE
GLU A:60 , THR A:65 , TRP A:66 , ASN A:123 , HOH A:2021 , HOH A:2022 , HOH A:2047 , THR B:173 , LYS B:175 , LYS B:177 , KCX B:201 , ASP B:203 , GLU B:204 , HIS B:294 , ARG B:295 , HIS B:327 , LYS B:334 , LEU B:335 , SER B:379 , GLY B:380 , GLY B:381 , GLY B:403 , GLY B:404 , MG B:1476 , HOH B:2159 , HOH B:2194 , HOH B:2195 , HOH B:2196 , HOH B:2197
BINDING SITE FOR RESIDUE CAP B1477
17
BC8
SOFTWARE
TYR B:24 , THR B:68 , VAL B:69 , ASP B:72 , HOH B:2031 , HOH B:2198
BINDING SITE FOR RESIDUE EDO B1478
18
BC9
SOFTWARE
VAL B:17 , LYS B:18 , TRP B:66 , THR B:67 , THR B:68 , HOH B:2198 , HOH B:2199
BINDING SITE FOR RESIDUE EDO B1479
19
CC1
SOFTWARE
TYR B:20 , GLU B:52 , HOH B:2200
BINDING SITE FOR RESIDUE EDO B1480
20
CC2
SOFTWARE
LYS B:466 , PHE B:467 , GLU B:468
BINDING SITE FOR RESIDUE EDO B1481
21
CC3
SOFTWARE
ARG B:295 , SER B:328 , GLY B:329 , GLU B:336 , GLY B:337 , ASP B:473 , HOH B:2140
BINDING SITE FOR RESIDUE EDO B1482
22
CC4
SOFTWARE
TYR C:52 , GLU C:54 , HOH C:2055
BINDING SITE FOR RESIDUE EDO C1135
23
CC5
SOFTWARE
GLY C:37 , ILE C:39 , PHE C:75 , GLY C:76
BINDING SITE FOR RESIDUE EDO C1136
24
CC6
SOFTWARE
THR E:173 , LYS E:175 , LYS E:177 , KCX E:201 , ASP E:203 , GLU E:204 , HIS E:294 , ARG E:295 , HIS E:327 , LYS E:334 , LEU E:335 , SER E:379 , GLY E:380 , GLY E:381 , GLY E:403 , GLY E:404 , MG E:1476 , HOH E:2079 , HOH E:2149 , HOH E:2150 , HOH E:2183 , HOH E:2184 , HOH E:2185 , GLU K:60 , THR K:65 , TRP K:66 , ASN K:123 , HOH K:2057
BINDING SITE FOR RESIDUE CAP E1477
25
CC7
SOFTWARE
TYR E:24 , GLY E:64 , THR E:68 , VAL E:69 , ASP E:72 , EDO E:1479 , HOH E:2037
BINDING SITE FOR RESIDUE EDO E1478
26
CC8
SOFTWARE
LYS E:18 , TYR E:20 , THR E:65 , TRP E:66 , THR E:67 , THR E:68 , EDO E:1478 , HOH E:2014
BINDING SITE FOR RESIDUE EDO E1479
27
CC9
SOFTWARE
TYR E:20 , GLU E:52 , ALA E:129 , HOH E:2015 , HOH E:2186
BINDING SITE FOR RESIDUE EDO E1480
28
DC1
SOFTWARE
LYS E:466 , PHE E:467 , GLU E:468 , EDO K:1480
BINDING SITE FOR RESIDUE EDO E1481
29
DC2
SOFTWARE
LEU E:270 , GLY E:273 , PHE E:274 , LEU K:270
BINDING SITE FOR RESIDUE EDO E1482
30
DC3
SOFTWARE
GLY F:37 , TRP F:38 , ILE F:39 , GLY F:76
BINDING SITE FOR RESIDUE EDO F1135
31
DC4
SOFTWARE
THR H:173 , LYS H:175 , LYS H:177 , KCX H:201 , ASP H:203 , GLU H:204 , HIS H:294 , ARG H:295 , HIS H:327 , LYS H:334 , LEU H:335 , SER H:379 , GLY H:380 , GLY H:381 , GLY H:403 , GLY H:404 , MG H:1476 , HOH H:2144 , HOH H:2162 , HOH H:2163 , HOH H:2164 , HOH H:2165 , GLU R:60 , THR R:65 , TRP R:66 , ASN R:123 , HOH R:2022
BINDING SITE FOR RESIDUE CAP H1477
32
DC5
SOFTWARE
TYR H:24 , THR H:68 , VAL H:69 , ASP H:72 , LEU H:77 , EDO H:1479 , HOH H:2030 , HOH H:2166
BINDING SITE FOR RESIDUE EDO H1478
33
DC6
SOFTWARE
LYS H:18 , TYR H:20 , THR H:65 , TRP H:66 , THR H:67 , THR H:68 , EDO H:1478 , HOH H:2010 , HOH H:2166
BINDING SITE FOR RESIDUE EDO H1479
34
DC7
SOFTWARE
TYR H:20 , GLU H:52 , ALA H:129 , HOH H:2024
BINDING SITE FOR RESIDUE EDO H1480
35
DC8
SOFTWARE
ARG H:295 , GLU H:336 , ASP H:473 , HOH H:2125
BINDING SITE FOR RESIDUE EDO H1481
36
DC9
SOFTWARE
GLY I:37 , ILE I:39 , GLY I:76
BINDING SITE FOR RESIDUE EDO I1135
37
EC1
SOFTWARE
GLY J:37 , ILE J:39 , PHE J:75 , GLY J:76
BINDING SITE FOR RESIDUE EDO J1135
38
EC2
SOFTWARE
GLU E:60 , THR E:65 , TRP E:66 , ASN E:123 , HOH E:2033 , THR K:173 , LYS K:175 , LYS K:177 , KCX K:201 , ASP K:203 , GLU K:204 , HIS K:294 , ARG K:295 , HIS K:327 , LYS K:334 , LEU K:335 , SER K:379 , GLY K:380 , GLY K:381 , GLY K:403 , GLY K:404 , MG K:1476 , HOH K:2125 , HOH K:2183 , HOH K:2184 , HOH K:2185 , HOH K:2186 , HOH K:2187
BINDING SITE FOR RESIDUE CAP K1477
39
EC3
SOFTWARE
TYR K:24 , GLY K:64 , THR K:68 , VAL K:69 , ASP K:72 , LEU K:77 , HOH K:2027 , HOH K:2188 , HOH K:2189
BINDING SITE FOR RESIDUE EDO K1478
40
EC4
SOFTWARE
LYS K:18 , TRP K:66 , THR K:67 , THR K:68 , HOH K:2027 , HOH K:2190
BINDING SITE FOR RESIDUE EDO K1479
41
EC5
SOFTWARE
EDO E:1481 , GLU K:52
BINDING SITE FOR RESIDUE EDO K1480
42
EC6
SOFTWARE
LYS K:466 , PHE K:467 , GLU K:468 , HOH K:2191
BINDING SITE FOR RESIDUE EDO K1481
43
EC7
SOFTWARE
GLU K:336 , ASP K:473
BINDING SITE FOR RESIDUE EDO K1482
44
EC8
SOFTWARE
GLY M:37 , ILE M:39 , GLY M:76 , CYS M:77
BINDING SITE FOR RESIDUE EDO M1135
45
EC9
SOFTWARE
THR O:173 , LYS O:175 , LYS O:177 , KCX O:201 , ASP O:203 , GLU O:204 , HIS O:294 , ARG O:295 , HIS O:327 , LYS O:334 , LEU O:335 , SER O:379 , GLY O:380 , GLY O:381 , GLY O:403 , GLY O:404 , MG O:1476 , HOH O:2108 , HOH O:2144 , HOH O:2184 , HOH O:2185 , HOH O:2186 , GLU V:60 , THR V:65 , TRP V:66 , ASN V:123 , HOH V:2026 , HOH V:2028 , HOH V:2059
BINDING SITE FOR RESIDUE CAP O1477
46
FC1
SOFTWARE
TYR O:24 , THR O:68 , VAL O:69 , ASP O:72 , LEU O:77 , EDO O:1479 , HOH O:2024 , HOH O:2188
BINDING SITE FOR RESIDUE EDO O1478
47
FC2
SOFTWARE
LYS O:18 , THR O:65 , TRP O:66 , THR O:67 , EDO O:1478 , HOH O:2187 , HOH O:2188
BINDING SITE FOR RESIDUE EDO O1479
48
FC3
SOFTWARE
GLU O:52 , EDO V:1482
BINDING SITE FOR RESIDUE EDO O1480
49
FC4
SOFTWARE
LYS O:466 , PHE O:467 , GLU O:468 , PHE O:469
BINDING SITE FOR RESIDUE EDO O1481
50
FC5
SOFTWARE
ARG O:295 , GLU O:336 , ASP O:473 , HOH O:2111
BINDING SITE FOR RESIDUE EDO O1482
51
FC6
SOFTWARE
TYR M:52 , HIS M:55 , ASP M:63 , HOH M:2018 , GLU O:223 , LYS O:227
BINDING SITE FOR RESIDUE EDO O1483
52
FC7
SOFTWARE
GLY P:37 , TRP P:38 , ILE P:39 , PHE P:75 , GLY P:76 , CYS P:77 , HOH P:2051
BINDING SITE FOR RESIDUE EDO P1135
53
FC8
SOFTWARE
GLU H:60 , THR H:65 , TRP H:66 , ASN H:123 , THR R:173 , LYS R:175 , LYS R:177 , KCX R:201 , ASP R:203 , GLU R:204 , HIS R:294 , ARG R:295 , HIS R:327 , LYS R:334 , LEU R:335 , SER R:379 , GLY R:380 , GLY R:381 , GLY R:403 , GLY R:404 , MG R:1476 , HOH R:2066 , HOH R:2110 , HOH R:2138 , HOH R:2179 , HOH R:2180 , HOH R:2181 , HOH R:2182
BINDING SITE FOR RESIDUE CAP R1477
54
FC9
SOFTWARE
TYR R:24 , GLY R:64 , THR R:68 , VAL R:69 , ASP R:72 , HOH R:2023 , HOH R:2027 , HOH R:2183
BINDING SITE FOR RESIDUE EDO R1478
55
GC1
SOFTWARE
LYS R:18 , THR R:65 , TRP R:66 , THR R:67 , THR R:68 , HOH R:2013 , HOH R:2183
BINDING SITE FOR RESIDUE EDO R1479
56
GC2
SOFTWARE
TYR R:20 , GLU R:52 , EDO R:1484 , HOH R:2010
BINDING SITE FOR RESIDUE EDO R1480
57
GC3
SOFTWARE
LYS R:466 , PHE R:467 , GLU R:468 , PHE R:469
BINDING SITE FOR RESIDUE EDO R1481
58
GC4
SOFTWARE
TYR P:52 , HIS P:55 , ASP P:63 , HOH P:2023 , GLU R:223 , TYR R:226 , LYS R:227
BINDING SITE FOR RESIDUE EDO R1482
59
GC5
SOFTWARE
LEU H:270 , GLY H:273 , PHE H:274 , LEU R:270 , THR R:271
BINDING SITE FOR RESIDUE EDO R1483
60
GC6
SOFTWARE
ARG B:439 , LYS H:466 , EDO R:1480
BINDING SITE FOR RESIDUE EDO R1484
61
GC7
SOFTWARE
TYR A:226 , ALA A:230 , HIS T:48 , TYR T:52 , GLU T:54 , HIS T:55
BINDING SITE FOR RESIDUE EDO T1135
62
GC8
SOFTWARE
GLY T:37 , TRP T:38 , ILE T:39 , GLY T:76 , HOH T:2048
BINDING SITE FOR RESIDUE EDO T1136
63
GC9
SOFTWARE
GLU O:60 , THR O:65 , TRP O:66 , ASN O:123 , HOH O:2021 , HOH O:2049 , THR V:173 , LYS V:175 , LYS V:177 , KCX V:201 , ASP V:203 , GLU V:204 , HIS V:294 , ARG V:295 , HIS V:327 , LYS V:334 , LEU V:335 , SER V:379 , GLY V:380 , GLY V:381 , GLY V:403 , GLY V:404 , MG V:1476 , HOH V:2078 , HOH V:2122 , HOH V:2123 , HOH V:2190 , HOH V:2191 , HOH V:2192
BINDING SITE FOR RESIDUE CAP V1477
64
HC1
SOFTWARE
LEU O:270 , LEU V:270 , PHE V:274
BINDING SITE FOR RESIDUE EDO V1478
65
HC2
SOFTWARE
TYR V:24 , THR V:68 , VAL V:69 , ASP V:72 , LEU V:77 , EDO V:1480 , HOH V:2193
BINDING SITE FOR RESIDUE EDO V1479
66
HC3
SOFTWARE
LYS V:18 , TYR V:20 , THR V:65 , TRP V:66 , THR V:67 , EDO V:1479 , HOH V:2194
BINDING SITE FOR RESIDUE EDO V1480
67
HC4
SOFTWARE
PHE O:469 , GLU V:52
BINDING SITE FOR RESIDUE EDO V1481
68
HC5
SOFTWARE
ARG E:439 , EDO O:1480 , LYS V:466 , PHE V:467 , GLU V:468 , PHE V:469
BINDING SITE FOR RESIDUE EDO V1482
69
HC6
SOFTWARE
ARG V:295 , GLU V:336 , ASP V:473
BINDING SITE FOR RESIDUE EDO V1483
70
HC7
SOFTWARE
GLY W:37 , TRP W:38 , GLY W:76 , CYS W:77 , HOH W:2034
BINDING SITE FOR RESIDUE EDO W1135
[
close Site info
]
SAPs(SNPs)/Variants
(1, 8)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_RBL_CHLRE_001 (P46P, chain A/B/E/H/K/O/R/V, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_RBL_CHLRE_001
*
L
46
P
RBL_CHLRE
---
---
A/B/E/H/K/O/R/V
P
46
P
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 8)
Info
All PROSITE Patterns/Profiles
1: RUBISCO_LARGE (A:196-204,B:196-204,E:196-204,H:19...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RUBISCO_LARGE
PS00157
Ribulose bisphosphate carboxylase large chain active site.
RBL_CHLRE
196-204
8
A:196-204
B:196-204
E:196-204
H:196-204
K:196-204
O:196-204
R:196-204
V:196-204
[
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]
Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 24)
Info
All SCOP Domains
1a: SCOP_d1uzda2 (A:11-149)
1b: SCOP_d1uzdb2 (B:9-149)
1c: SCOP_d1uzde2 (E:11-149)
1d: SCOP_d1uzdh2 (H:7-149)
1e: SCOP_d1uzdk2 (K:7-149)
1f: SCOP_d1uzdo2 (O:7-149)
1g: SCOP_d1uzdr2 (R:11-149)
1h: SCOP_d1uzdv2 (V:10-149)
2a: SCOP_d1uzdc1 (C:1-134)
2b: SCOP_d1uzdf_ (F:)
2c: SCOP_d1uzdi_ (I:)
2d: SCOP_d1uzdj_ (J:)
2e: SCOP_d1uzdm_ (M:)
2f: SCOP_d1uzdp_ (P:)
2g: SCOP_d1uzdt_ (T:)
2h: SCOP_d1uzdw_ (W:)
3a: SCOP_d1uzda1 (A:150-475)
3b: SCOP_d1uzdb1 (B:150-475)
3c: SCOP_d1uzde1 (E:150-475)
3d: SCOP_d1uzdh1 (H:150-475)
3e: SCOP_d1uzdk1 (K:150-475)
3f: SCOP_d1uzdo1 (O:150-475)
3g: SCOP_d1uzdr1 (R:150-475)
3h: SCOP_d1uzdv1 (V:150-475)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
RuBisCO, large subunit, small (N-terminal) domain
(66)
Family
:
Ribulose 1,5-bisphosphate carboxylase-oxygenase
(39)
Protein domain
:
Ribulose 1,5-bisphosphate carboxylase-oxygenase
(39)
Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]
(4)
1a
d1uzda2
A:11-149
1b
d1uzdb2
B:9-149
1c
d1uzde2
E:11-149
1d
d1uzdh2
H:7-149
1e
d1uzdk2
K:7-149
1f
d1uzdo2
O:7-149
1g
d1uzdr2
R:11-149
1h
d1uzdv2
V:10-149
Fold
:
RuBisCO, small subunit
(44)
Superfamily
:
RuBisCO, small subunit
(44)
Family
:
RuBisCO, small subunit
(44)
Protein domain
:
Ribulose 1,5-bisphosphate carboxylase-oxygenase
(28)
Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]
(6)
2a
d1uzdc1
C:1-134
2b
d1uzdf_
F:
2c
d1uzdi_
I:
2d
d1uzdj_
J:
2e
d1uzdm_
M:
2f
d1uzdp_
P:
2g
d1uzdt_
T:
2h
d1uzdw_
W:
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
RuBisCo, C-terminal domain
(66)
Family
:
RuBisCo, large subunit, C-terminal domain
(56)
Protein domain
:
Ribulose 1,5-bisphosphate carboxylase-oxygenase
(40)
Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]
(4)
3a
d1uzda1
A:150-475
3b
d1uzdb1
B:150-475
3c
d1uzde1
E:150-475
3d
d1uzdh1
H:150-475
3e
d1uzdk1
K:150-475
3f
d1uzdo1
O:150-475
3g
d1uzdr1
R:150-475
3h
d1uzdv1
V:150-475
[
close SCOP info
]
CATH Domains
(3, 24)
Info
all CATH domains
1a: CATH_1uzdA01 (A:22-148)
1b: CATH_1uzdB01 (B:22-148)
1c: CATH_1uzdE01 (E:22-148)
1d: CATH_1uzdH01 (H:22-148)
1e: CATH_1uzdK01 (K:22-148)
1f: CATH_1uzdO01 (O:22-148)
1g: CATH_1uzdR01 (R:22-148)
1h: CATH_1uzdV01 (V:22-148)
2a: CATH_1uzdC00 (C:1-134)
2b: CATH_1uzdF00 (F:1-134)
2c: CATH_1uzdI00 (I:1-134)
2d: CATH_1uzdJ00 (J:1-134)
2e: CATH_1uzdM00 (M:1-134)
2f: CATH_1uzdP00 (P:1-134)
2g: CATH_1uzdT00 (T:1-134)
2h: CATH_1uzdW00 (W:1-134)
3a: CATH_1uzdA02 (A:149-462)
3b: CATH_1uzdB02 (B:149-462)
3c: CATH_1uzdE02 (E:149-462)
3d: CATH_1uzdH02 (H:149-462)
3e: CATH_1uzdK02 (K:149-462)
3f: CATH_1uzdO02 (O:149-462)
3g: CATH_1uzdR02 (R:149-462)
3h: CATH_1uzdV02 (V:149-462)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.150, no name defined]
(49)
Chlamydomonas reinhardtii. Organism_taxid: 3055.
(5)
1a
1uzdA01
A:22-148
1b
1uzdB01
B:22-148
1c
1uzdE01
E:22-148
1d
1uzdH01
H:22-148
1e
1uzdK01
K:22-148
1f
1uzdO01
O:22-148
1g
1uzdR01
R:22-148
1h
1uzdV01
V:22-148
Topology
:
Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase
(42)
Homologous Superfamily
:
[code=3.30.190.10, no name defined]
(35)
Chlamydomonas reinhardtii. Organism_taxid: 3055.
(5)
2a
1uzdC00
C:1-134
2b
1uzdF00
F:1-134
2c
1uzdI00
I:1-134
2d
1uzdJ00
J:1-134
2e
1uzdM00
M:1-134
2f
1uzdP00
P:1-134
2g
1uzdT00
T:1-134
2h
1uzdW00
W:1-134
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Rubisco
(49)
Chlamydomonas reinhardtii. Organism_taxid: 3055.
(5)
3a
1uzdA02
A:149-462
3b
1uzdB02
B:149-462
3c
1uzdE02
E:149-462
3d
1uzdH02
H:149-462
3e
1uzdK02
K:149-462
3f
1uzdO02
O:149-462
3g
1uzdR02
R:149-462
3h
1uzdV02
V:149-462
[
close CATH info
]
Pfam Domains
(3, 24)
Info
all PFAM domains
1a: PFAM_RuBisCO_large_1uzdV01 (V:154-462)
1b: PFAM_RuBisCO_large_1uzdV02 (V:154-462)
1c: PFAM_RuBisCO_large_1uzdV03 (V:154-462)
1d: PFAM_RuBisCO_large_1uzdV04 (V:154-462)
1e: PFAM_RuBisCO_large_1uzdV05 (V:154-462)
1f: PFAM_RuBisCO_large_1uzdV06 (V:154-462)
1g: PFAM_RuBisCO_large_1uzdV07 (V:154-462)
1h: PFAM_RuBisCO_large_1uzdV08 (V:154-462)
2a: PFAM_RuBisCO_large_N_1uzdV09 (V:21-146)
2b: PFAM_RuBisCO_large_N_1uzdV10 (V:21-146)
2c: PFAM_RuBisCO_large_N_1uzdV11 (V:21-146)
2d: PFAM_RuBisCO_large_N_1uzdV12 (V:21-146)
2e: PFAM_RuBisCO_large_N_1uzdV13 (V:21-146)
2f: PFAM_RuBisCO_large_N_1uzdV14 (V:21-146)
2g: PFAM_RuBisCO_large_N_1uzdV15 (V:21-146)
2h: PFAM_RuBisCO_large_N_1uzdV16 (V:21-146)
3a: PFAM_RuBisCO_small_1uzdW01 (W:11-121)
3b: PFAM_RuBisCO_small_1uzdW02 (W:11-121)
3c: PFAM_RuBisCO_small_1uzdW03 (W:11-121)
3d: PFAM_RuBisCO_small_1uzdW04 (W:11-121)
3e: PFAM_RuBisCO_small_1uzdW05 (W:11-121)
3f: PFAM_RuBisCO_small_1uzdW06 (W:11-121)
3g: PFAM_RuBisCO_small_1uzdW07 (W:11-121)
3h: PFAM_RuBisCO_small_1uzdW08 (W:11-121)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: RuBisCO_large]
(36)
Family
:
RuBisCO_large
(36)
Chlamydomonas reinhardtii (Chlamydomonas smithii)
(10)
1a
RuBisCO_large-1uzdV01
V:154-462
1b
RuBisCO_large-1uzdV02
V:154-462
1c
RuBisCO_large-1uzdV03
V:154-462
1d
RuBisCO_large-1uzdV04
V:154-462
1e
RuBisCO_large-1uzdV05
V:154-462
1f
RuBisCO_large-1uzdV06
V:154-462
1g
RuBisCO_large-1uzdV07
V:154-462
1h
RuBisCO_large-1uzdV08
V:154-462
Clan
:
no clan defined [family: RuBisCO_large_N]
(27)
Family
:
RuBisCO_large_N
(27)
Chlamydomonas reinhardtii (Chlamydomonas smithii)
(10)
2a
RuBisCO_large_N-1uzdV09
V:21-146
2b
RuBisCO_large_N-1uzdV10
V:21-146
2c
RuBisCO_large_N-1uzdV11
V:21-146
2d
RuBisCO_large_N-1uzdV12
V:21-146
2e
RuBisCO_large_N-1uzdV13
V:21-146
2f
RuBisCO_large_N-1uzdV14
V:21-146
2g
RuBisCO_large_N-1uzdV15
V:21-146
2h
RuBisCO_large_N-1uzdV16
V:21-146
Clan
:
no clan defined [family: RuBisCO_small]
(23)
Family
:
RuBisCO_small
(23)
Chlamydomonas reinhardtii (Chlamydomonas smithii)
(10)
3a
RuBisCO_small-1uzdW01
W:11-121
3b
RuBisCO_small-1uzdW02
W:11-121
3c
RuBisCO_small-1uzdW03
W:11-121
3d
RuBisCO_small-1uzdW04
W:11-121
3e
RuBisCO_small-1uzdW05
W:11-121
3f
RuBisCO_small-1uzdW06
W:11-121
3g
RuBisCO_small-1uzdW07
W:11-121
3h
RuBisCO_small-1uzdW08
W:11-121
[
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]
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