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1UY0
Asym. Unit
Info
Asym.Unit (55 KB)
Biol.Unit 1 (26 KB)
Biol.Unit 2 (26 KB)
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(1)
Title
:
CARBOHYDRATE BINDING MODULE (CBM6CM-2) FROM CELLVIBRIO MIXTUS LICHENASE 5A IN COMPLEX WITH GLC-1,3-GLC-1,4-GLC-1,3-GLC
Authors
:
M. Czjzek, V. M. R. Pires, J. Henshaw, J. A. M. Prates, D. Bolam, B. Henrissat, H. J. Gilbert
Date
:
01 Mar 04 (Deposition) - 11 Mar 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.65
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Carbohydrate Binding Module, Cbm6, Mixted Beta1, 3-1, 4 Linked Glucan
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. M. R. Pires, J. Henshaw, J. A. M. Prates, D. Bolam, L. M. A. Ferreira, C. M. G. A. Fontes, B. Henrissat, A. Planas, H. J. Gilbert, M. Czjzek
The Crystal Structure Of The Family 6 Carbohydrate Binding Module From Cellvibrio Mixtus Endoglucanase 5A In Complex With Oligosaccharides Reveals Two Distinct Binding Sites With Different Ligand Specificities
J. Biol. Chem. V. 279 21560 2004
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Hetero Components
(5, 19)
Info
All Hetero Components
1a: BETA-D-GLUCOSE (BGCa)
1b: BETA-D-GLUCOSE (BGCb)
1c: BETA-D-GLUCOSE (BGCc)
1d: BETA-D-GLUCOSE (BGCd)
1e: BETA-D-GLUCOSE (BGCe)
1f: BETA-D-GLUCOSE (BGCf)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
3c: CHLORIDE ION (CLc)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
5a: SODIUM ION (NAa)
5b: SODIUM ION (NAb)
5c: SODIUM ION (NAc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BGC
6
Ligand/Ion
BETA-D-GLUCOSE
2
CA
4
Ligand/Ion
CALCIUM ION
3
CL
3
Ligand/Ion
CHLORIDE ION
4
GOL
3
Ligand/Ion
GLYCEROL
5
NA
3
Ligand/Ion
SODIUM ION
[
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TRP A:39 , GLU A:73 , GLU A:74 , ALA A:75 , GLY A:76 , GLY A:77 , LYS A:114 , BGC A:1135 , HOH A:2156
BINDING SITE FOR RESIDUE BGC A1134
02
AC2
SOFTWARE
GLN A:13 , TRP A:39 , SER A:41 , ALA A:43 , ALA A:75 , GLY A:76 , BGC A:1134 , HOH A:2157 , HOH A:2158 , HOH A:2159 , HOH A:2160 , ASN B:48
BINDING SITE FOR RESIDUE BGC A1135
03
AC3
SOFTWARE
VAL A:2 , GLY B:37 , LYS B:114 , BGC B:1134 , HOH B:2162
BINDING SITE FOR RESIDUE BGC B1133
04
AC4
SOFTWARE
TRP B:39 , GLU B:73 , GLU B:74 , ALA B:75 , GLY B:76 , LYS B:114 , BGC B:1133 , BGC B:1135 , HOH B:2163
BINDING SITE FOR RESIDUE BGC B1134
05
AC5
SOFTWARE
GLN B:13 , SER B:41 , ALA B:75 , GLY B:76 , BGC B:1134 , BGC B:1136 , HOH B:2031 , HOH B:2164 , HOH B:2165
BINDING SITE FOR RESIDUE BGC B1135
06
AC6
SOFTWARE
GLN B:13 , BGC B:1135 , HOH B:2164 , HOH B:2165
BINDING SITE FOR RESIDUE BGC B1136
07
AC7
SOFTWARE
GLY A:16 , TYR A:33 , ASP A:35 , ASP A:38 , HOH A:2054 , HOH B:2007
BINDING SITE FOR RESIDUE CA A1131
08
AC8
SOFTWARE
GLN A:7 , GLU A:9 , LYS A:29 , ASN A:123 , HOH A:2050
BINDING SITE FOR RESIDUE CA A1136
09
AC9
SOFTWARE
ALA A:36 , GLY A:118 , HOH A:2056
BINDING SITE FOR RESIDUE CL A1137
10
BC1
SOFTWARE
HIS A:81 , SER A:105 , HIS A:109 , HOH A:2100
BINDING SITE FOR RESIDUE NA A1138
11
BC2
SOFTWARE
GLY A:91 , GLN A:93 , THR A:94
BINDING SITE FOR RESIDUE CL A1139
12
BC3
SOFTWARE
HOH A:2003 , GLY B:16 , TYR B:33 , ASP B:35 , ASP B:38 , HOH B:2075
BINDING SITE FOR RESIDUE CA B1131
13
BC4
SOFTWARE
GLN B:7 , GLU B:9 , LYS B:29 , ASN B:123 , HOH B:2015
BINDING SITE FOR RESIDUE CA B1137
14
BC5
SOFTWARE
GLY B:91 , GLN B:93 , THR B:94
BINDING SITE FOR RESIDUE CL B1139
15
BC6
SOFTWARE
ALA B:36 , GLY B:118 , HOH B:2151 , HOH B:2153
BINDING SITE FOR RESIDUE NA B1140
16
BC7
SOFTWARE
GLU A:20 , GLY A:32 , TYR A:33 , TRP A:92 , ASN A:121 , HOH A:2145 , HOH A:2152 , HOH A:2153
BINDING SITE FOR RESIDUE GOL A1132
17
BC8
SOFTWARE
GLN A:18 , TYR A:33 , HOH A:2154 , HOH A:2155 , ASP B:10 , HIS B:11 , SER B:12 , HOH B:2023 , HOH B:2026
BINDING SITE FOR RESIDUE GOL A1133
18
BC9
SOFTWARE
GLU B:20 , GLY B:32 , TYR B:33 , TRP B:92 , ASN B:121 , HOH B:2120 , HOH B:2154 , HOH B:2161
BINDING SITE FOR RESIDUE GOL B1132
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1uy0a_ (A:)
1b: SCOP_d1uy0b_ (B:)
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Protein Domains
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(
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Organisms
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(
)
Class
:
All beta proteins
(24004)
Fold
:
Galactose-binding domain-like
(314)
Superfamily
:
Galactose-binding domain-like
(314)
Family
:
Family 6 carbohydrate binding module, CBM6
(19)
Protein domain
:
Cellulase B (lichenase 5a)
(6)
Cellvibrio mixtus [TaxId: 39650]
(6)
1a
d1uy0a_
A:
1b
d1uy0b_
B:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1uy0A00 (A:1-131)
1b: CATH_1uy0B00 (B:1-131)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
Galactose-binding domain-like
(195)
Cellvibrio mixtus. Organism_taxid: 39650.
(6)
1a
1uy0A00
A:1-131
1b
1uy0B00
B:1-131
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (55 KB)
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Header - Biol.Unit 1
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