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1UXX
Asym. Unit
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Asym.Unit (28 KB)
Biol.Unit 1 (23 KB)
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(1)
Title
:
CBM6CT FROM CLOSTRIDIUM THERMOCELLUM IN COMPLEX WITH XYLOPENTAOSE
Authors
:
M. Czjzek, V. M. R. Pires, J. Henshaw, J. A. M. Prates, D. B. B. Henrissat, H. J. Gilbert
Date
:
01 Mar 04 (Deposition) - 11 Mar 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : X
Biol. Unit 1: X (1x)
Keywords
:
Carbohydrate Binding Module, Cbm6, Xylopentaose Binding, Xylan Degradation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. M. R. Pires, J. Henshaw, J. A. M. Prates, D. Bolam, L. M. A. Ferreira, C. M. G. A. Fontes, B. Henrissat, A. Planas, H. J. Gilbert, M. Czjzek
The Crystal Structure Of The Family 6 Carbohydrate Binding Module From Cellvibrio Mixtus Endoglucanase 5A In Complex With Oligosaccharides Reveals Two Distinct Binding Sites With Different Ligand Specificities
J. Biol. Chem. V. 279 21560 2004
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
2a: BETA-D-XYLOPYRANOSE (XYPa)
2b: BETA-D-XYLOPYRANOSE (XYPb)
2c: BETA-D-XYLOPYRANOSE (XYPc)
2d: BETA-D-XYLOPYRANOSE (XYPd)
2e: BETA-D-XYLOPYRANOSE (XYPe)
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Label:
No.
Name
Count
Type
Full Name
1
CA
1
Ligand/Ion
CALCIUM ION
2
XYP
5
Ligand/Ion
BETA-D-XYLOPYRANOSE
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA X:63 , ASP X:64 , THR X:65 , XYP X:1132
BINDING SITE FOR RESIDUE XYP X1131
2
AC2
SOFTWARE
TRP X:92 , PRO X:118 , XYP X:1131 , XYP X:1133 , HOH X:2104 , HOH X:2106
BINDING SITE FOR RESIDUE XYP X1132
3
AC3
SOFTWARE
GLY X:33 , TYR X:34 , TRP X:92 , PRO X:118 , ASN X:120 , XYP X:1132 , XYP X:1134 , HOH X:2098 , HOH X:2105 , HOH X:2106
BINDING SITE FOR RESIDUE XYP X1133
4
AC4
SOFTWARE
ASN X:93 , ASN X:120 , XYP X:1133 , XYP X:1135 , HOH X:2107 , HOH X:2108
BINDING SITE FOR RESIDUE XYP X1134
5
AC5
SOFTWARE
GLY X:24 , THR X:25 , SER X:26 , LYS X:45 , ASN X:93 , XYP X:1134 , HOH X:2025
BINDING SITE FOR RESIDUE XYP X1135
6
AC6
SOFTWARE
GLU X:8 , GLU X:10 , SER X:30 , ASP X:122 , HOH X:2100
BINDING SITE FOR RESIDUE CA X1130
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
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1a: SCOP_d1uxxx_ (X:)
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)
Class
:
All beta proteins
(24004)
Fold
:
Galactose-binding domain-like
(314)
Superfamily
:
Galactose-binding domain-like
(314)
Family
:
Family 6 carbohydrate binding module, CBM6
(19)
Protein domain
:
Carbohydrate binding module from xylanase U
(2)
Clostridium thermocellum [TaxId: 1515]
(2)
1a
d1uxxx_
X:
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CATH Domains
(1, 1)
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all CATH domains
1a: CATH_1uxxX00 (X:6-130)
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Organisms
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)
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)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
Galactose-binding domain-like
(195)
Clostridium thermocellum. Organism_taxid: 1515.
(2)
1a
1uxxX00
X:6-130
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Pfam Domains
(1, 1)
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all PFAM domains
1a: PFAM_CBM_6_1uxxX01 (X:8-128)
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(
)
Clan
:
GBD
(153)
Family
:
CBM_6
(24)
Clostridium thermocellum
(1)
1a
CBM_6-1uxxX01
X:8-128
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