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Getting 'PROSITE' information from database.
1UXL
Biol. Unit 2
Info
Asym.Unit (289 KB)
Biol.Unit 1 (61 KB)
Biol.Unit 2 (59 KB)
Biol.Unit 3 (62 KB)
Biol.Unit 4 (59 KB)
Biol.Unit 5 (58 KB)
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(1)
Title
:
I113T MUTANT OF HUMAN SOD1
Authors
:
M. A. Hough, J. G. Grossmann, S. V. Antonyuk, R. W. Strange, P. A. Doucett J. A. Rodriguez, L. J. Whitson, P. J. Hart, L. J. Hayward, J. S. Valentin S. S. Hasnain
Date
:
25 Feb 04 (Deposition) - 19 Mar 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A,F (1x)
Biol. Unit 2: B,G (1x)
Biol. Unit 3: C,H (1x)
Biol. Unit 4: D,I (1x)
Biol. Unit 5: E,J (1x)
Keywords
:
Human Cu, Zn Superoxide Dismutase, Antioxidant, Metal- Binding, Amyotrophic Lateral Sclerosis, Disease Mutation, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. A. Hough, J. G. Grossmann, S. V. Antonyuk, R. W. Strange, P. A. Doucette, J. A. Rodriguez, L. J. Whitson, P. J. Hart, L. J. Hayward J. S. Valentine, S. S. Hasnain
Dimer Destabilization In Superoxide Dismutase May Result In Disease-Causing Properties: Structures Of Motor Neuron Disease Mutants
Proc. Natl. Acad. Sci. Usa V. 101 5976 2004
[
close entry info
]
Hetero Components
(1, 1)
Info
All Hetero Components
1a: COPPER (II) ION (CUa)
1b: COPPER (II) ION (CUb)
1c: COPPER (II) ION (CUc)
1d: COPPER (II) ION (CUd)
1e: COPPER (II) ION (CUe)
1f: COPPER (II) ION (CUf)
1g: COPPER (II) ION (CUg)
1h: COPPER (II) ION (CUh)
1i: COPPER (II) ION (CUi)
1j: COPPER (II) ION (CUj)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
3e: ZINC ION (ZNe)
3f: ZINC ION (ZNf)
3g: ZINC ION (ZNg)
3h: ZINC ION (ZNh)
3i: ZINC ION (ZNi)
3j: ZINC ION (ZNj)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CU
-1
Ligand/Ion
COPPER (II) ION
2
SO4
1
Ligand/Ion
SULFATE ION
3
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(5, 5)
Info
All Sites
1: AC4 (SOFTWARE)
2: AC5 (SOFTWARE)
3: AC6 (SOFTWARE)
4: CC1 (SOFTWARE)
5: CC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC4
SOFTWARE
HIS B:46 , HIS B:48 , HIS B:63 , HIS B:120 , SO4 B:156
BINDING SITE FOR RESIDUE CU B 154
2
AC5
SOFTWARE
HIS B:63 , HIS B:71 , HIS B:80 , ASP B:83
BINDING SITE FOR RESIDUE ZN B 155
3
AC6
SOFTWARE
HIS B:46 , HIS B:48 , HIS B:63 , HIS B:120 , THR B:137 , ARG B:143 , CU B:154 , HOH B:2177 , HOH B:2197
BINDING SITE FOR RESIDUE SO4 B 156
4
CC1
SOFTWARE
HIS G:46 , HIS G:48 , HIS G:63 , HIS G:120
BINDING SITE FOR RESIDUE CU G 154
5
CC2
SOFTWARE
HIS G:63 , HIS G:71 , HIS G:80 , ASP G:83
BINDING SITE FOR RESIDUE ZN G 155
[
close Site info
]
SAPs(SNPs)/Variants
(78, 156)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_013518 (A4S, chain B/G, )
02: VAR_007130 (A4T, chain B/G, )
03: VAR_007131 (A4V, chain B/G, )
04: VAR_008717 (C6F, chain B/G, )
05: VAR_007132 (V7E, chain B/G, )
06: VAR_013519 (L8Q, chain B/G, )
07: VAR_013520 (L8V, chain B/G, )
08: VAR_013521 (G12R, chain B/G, )
09: VAR_013522 (V14G, chain B/G, )
10: VAR_007133 (V14M, chain B/G, )
11: VAR_007134 (G16S, chain B/G, )
12: VAR_045876 (F20C, chain B/G, )
13: VAR_013523 (E21G, chain B/G, )
14: VAR_007135 (E21K, chain B/G, )
15: VAR_045877 (Q22L, chain B/G, )
16: VAR_007136 (G37R, chain B/G, )
17: VAR_013524 (L38R, chain B/G, )
18: VAR_007137 (L38V, chain B/G, )
19: VAR_007139 (G41D, chain B/G, )
20: VAR_007138 (G41S, chain B/G, )
21: VAR_007140 (H43R, chain B/G, )
22: VAR_013525 (F45C, chain B/G, )
23: VAR_007141 (H46R, chain B/G, )
24: VAR_007142 (H48Q, chain B/G, )
25: VAR_045878 (H48R, chain B/G, )
26: VAR_013526 (E49K, chain B/G, )
27: VAR_045879 (T54R, chain B/G, )
28: VAR_013527 (N65S, chain B/G, )
29: VAR_065560 (L67P, chain B/G, )
30: VAR_013528 (L67R, chain B/G, )
31: VAR_008718 (G72S, chain B/G, )
32: VAR_013529 (D76Y, chain B/G, )
33: VAR_016874 (H80A, chain B/G, )
34: VAR_013530 (L84F, chain B/G, )
35: VAR_007143 (L84V, chain B/G, )
36: VAR_007144 (G85R, chain B/G, )
37: VAR_013531 (N86S, chain B/G, )
38: VAR_045880 (V87A, chain B/G, )
39: VAR_045881 (A89T, chain B/G, )
40: VAR_013532 (A89V, chain B/G, )
41: VAR_007145 (D90A, chain B/G, )
42: VAR_013533 (D90V, chain B/G, )
43: VAR_007146 (G93A, chain B/G, )
44: VAR_007147 (G93C, chain B/G, )
45: VAR_007148 (G93D, chain B/G, )
46: VAR_007149 (G93R, chain B/G, )
47: VAR_008719 (G93V, chain B/G, )
48: VAR_065194 (A95G, chain B/G, )
49: VAR_045882 (V97M, chain B/G, )
50: VAR_007150 (E100G, chain B/G, )
51: VAR_013534 (E100K, chain B/G, )
52: VAR_007151 (D101G, chain B/G, )
53: VAR_007152 (D101N, chain B/G, )
54: VAR_008720 (I104F, chain B/G, )
55: VAR_013535 (S105L, chain B/G, )
56: VAR_007153 (L106V, chain B/G, )
57: VAR_013536 (G108V, chain B/G, )
58: VAR_013537 (I112M, chain B/G, )
59: VAR_007154 (I112T, chain B/G, )
60: VAR_007155 (T113T, chain B/G, )
61: VAR_013538 (G114A, chain B/G, )
62: VAR_007156 (R115G, chain B/G, )
63: VAR_045883 (V118L, chain B/G, )
64: VAR_045884 (D124G, chain B/G, )
65: VAR_008722 (D124V, chain B/G, )
66: VAR_007157 (D125H, chain B/G, )
67: VAR_013539 (L126S, chain B/G, )
68: VAR_007158 (S134N, chain B/G, )
69: VAR_007159 (N139K, chain B/G, )
70: VAR_007160 (L144F, chain B/G, )
71: VAR_008724 (L144S, chain B/G, )
72: VAR_008725 (A145T, chain B/G, )
73: VAR_013540 (C146R, chain B/G, )
74: VAR_045885 (G147R, chain B/G, )
75: VAR_007161 (V148G, chain B/G, )
76: VAR_007162 (V148I, chain B/G, )
77: VAR_007163 (I149T, chain B/G, )
78: VAR_007164 (I151T, chain B/G, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_013518
A
5
S
SODC_HUMAN
Disease (ALS1)
---
B/G
A
4
S
02
UniProt
VAR_007130
A
5
T
SODC_HUMAN
Disease (ALS1)
---
B/G
A
4
T
03
UniProt
VAR_007131
A
5
V
SODC_HUMAN
Disease (ALS1)
---
B/G
A
4
V
04
UniProt
VAR_008717
C
7
F
SODC_HUMAN
Disease (ALS1)
---
B/G
C
6
F
05
UniProt
VAR_007132
V
8
E
SODC_HUMAN
Disease (ALS1)
---
B/G
V
7
E
06
UniProt
VAR_013519
L
9
Q
SODC_HUMAN
Disease (ALS1)
---
B/G
L
8
Q
07
UniProt
VAR_013520
L
9
V
SODC_HUMAN
Disease (ALS1)
---
B/G
L
8
V
08
UniProt
VAR_013521
G
13
R
SODC_HUMAN
Disease (ALS1)
---
B/G
G
12
R
09
UniProt
VAR_013522
V
15
G
SODC_HUMAN
Disease (ALS1)
---
B/G
V
14
G
10
UniProt
VAR_007133
V
15
M
SODC_HUMAN
Disease (ALS1)
---
B/G
V
14
M
11
UniProt
VAR_007134
G
17
S
SODC_HUMAN
Disease (ALS1)
---
B/G
G
16
S
12
UniProt
VAR_045876
F
21
C
SODC_HUMAN
Disease (ALS1)
---
B/G
F
20
C
13
UniProt
VAR_013523
E
22
G
SODC_HUMAN
Disease (ALS1)
---
B/G
E
21
G
14
UniProt
VAR_007135
E
22
K
SODC_HUMAN
Disease (ALS1)
---
B/G
E
21
K
15
UniProt
VAR_045877
Q
23
L
SODC_HUMAN
Disease (ALS1)
---
B/G
Q
22
L
16
UniProt
VAR_007136
G
38
R
SODC_HUMAN
Disease (ALS1)
---
B/G
G
37
R
17
UniProt
VAR_013524
L
39
R
SODC_HUMAN
Disease (ALS1)
---
B/G
L
38
R
18
UniProt
VAR_007137
L
39
V
SODC_HUMAN
Disease (ALS1)
---
B/G
L
38
V
19
UniProt
VAR_007139
G
42
D
SODC_HUMAN
Disease (ALS1)
---
B/G
G
41
D
20
UniProt
VAR_007138
G
42
S
SODC_HUMAN
Disease (ALS1)
---
B/G
G
41
S
21
UniProt
VAR_007140
H
44
R
SODC_HUMAN
Disease (ALS1)
---
B/G
H
43
R
22
UniProt
VAR_013525
F
46
C
SODC_HUMAN
Disease (ALS1)
---
B/G
F
45
C
23
UniProt
VAR_007141
H
47
R
SODC_HUMAN
Disease (ALS1)
---
B/G
H
46
R
24
UniProt
VAR_007142
H
49
Q
SODC_HUMAN
Disease (ALS1)
---
B/G
H
48
Q
25
UniProt
VAR_045878
H
49
R
SODC_HUMAN
Disease (ALS1)
---
B/G
H
48
R
26
UniProt
VAR_013526
E
50
K
SODC_HUMAN
Disease (ALS1)
---
B/G
E
49
K
27
UniProt
VAR_045879
T
55
R
SODC_HUMAN
Disease (ALS1)
---
B/G
T
54
R
28
UniProt
VAR_013527
N
66
S
SODC_HUMAN
Disease (ALS1)
---
B/G
N
65
S
29
UniProt
VAR_065560
L
68
P
SODC_HUMAN
Disease (ALS1)
---
B/G
L
67
P
30
UniProt
VAR_013528
L
68
R
SODC_HUMAN
Disease (ALS1)
---
B/G
L
67
R
31
UniProt
VAR_008718
G
73
S
SODC_HUMAN
Disease (ALS1)
---
B/G
G
72
S
32
UniProt
VAR_013529
D
77
Y
SODC_HUMAN
Disease (ALS1)
---
B/G
D
76
Y
33
UniProt
VAR_016874
H
81
A
SODC_HUMAN
Disease (ALS1)
---
B/G
H
80
A
34
UniProt
VAR_013530
L
85
F
SODC_HUMAN
Disease (ALS1)
---
B/G
L
84
F
35
UniProt
VAR_007143
L
85
V
SODC_HUMAN
Disease (ALS1)
---
B/G
L
84
V
36
UniProt
VAR_007144
G
86
R
SODC_HUMAN
Disease (ALS1)
---
B/G
G
85
R
37
UniProt
VAR_013531
N
87
S
SODC_HUMAN
Disease (ALS1)
11556620
B/G
N
86
S
38
UniProt
VAR_045880
V
88
A
SODC_HUMAN
Disease (ALS1)
---
B/G
V
87
A
39
UniProt
VAR_045881
A
90
T
SODC_HUMAN
Disease (ALS1)
---
B/G
A
89
T
40
UniProt
VAR_013532
A
90
V
SODC_HUMAN
Disease (ALS1)
---
B/G
A
89
V
41
UniProt
VAR_007145
D
91
A
SODC_HUMAN
Disease (ALS1)
80265967
B/G
D
90
A
42
UniProt
VAR_013533
D
91
V
SODC_HUMAN
Disease (ALS1)
---
B/G
D
90
V
43
UniProt
VAR_007146
G
94
A
SODC_HUMAN
Disease (ALS1)
---
B/G
G
93
A
44
UniProt
VAR_007147
G
94
C
SODC_HUMAN
Disease (ALS1)
---
B/G
G
93
C
45
UniProt
VAR_007148
G
94
D
SODC_HUMAN
Disease (ALS1)
---
B/G
G
93
D
46
UniProt
VAR_007149
G
94
R
SODC_HUMAN
Disease (ALS1)
---
B/G
G
93
R
47
UniProt
VAR_008719
G
94
V
SODC_HUMAN
Disease (ALS1)
---
B/G
G
93
V
48
UniProt
VAR_065194
A
96
G
SODC_HUMAN
Disease (ALS1)
---
B/G
A
95
G
49
UniProt
VAR_045882
V
98
M
SODC_HUMAN
Disease (ALS1)
---
B/G
V
97
M
50
UniProt
VAR_007150
E
101
G
SODC_HUMAN
Disease (ALS1)
---
B/G
E
100
G
51
UniProt
VAR_013534
E
101
K
SODC_HUMAN
Disease (ALS1)
---
B/G
E
100
K
52
UniProt
VAR_007151
D
102
G
SODC_HUMAN
Disease (ALS1)
---
B/G
D
101
G
53
UniProt
VAR_007152
D
102
N
SODC_HUMAN
Disease (ALS1)
---
B/G
D
101
N
54
UniProt
VAR_008720
I
105
F
SODC_HUMAN
Disease (ALS1)
---
B/G
I
104
F
55
UniProt
VAR_013535
S
106
L
SODC_HUMAN
Disease (ALS1)
---
B/G
S
105
L
56
UniProt
VAR_007153
L
107
V
SODC_HUMAN
Disease (ALS1)
---
B/G
L
106
V
57
UniProt
VAR_013536
G
109
V
SODC_HUMAN
Disease (ALS1)
---
B/G
G
108
V
58
UniProt
VAR_013537
I
113
M
SODC_HUMAN
Disease (ALS1)
---
B/G
I
112
M
59
UniProt
VAR_007154
I
113
T
SODC_HUMAN
Disease (ALS1)
---
B/G
I
112
T
60
UniProt
VAR_007155
I
114
T
SODC_HUMAN
Disease (ALS1)
---
B/G
T
113
T
61
UniProt
VAR_013538
G
115
A
SODC_HUMAN
Disease (ALS1)
---
B/G
G
114
A
62
UniProt
VAR_007156
R
116
G
SODC_HUMAN
Disease (ALS1)
---
B/G
R
115
G
63
UniProt
VAR_045883
V
119
L
SODC_HUMAN
Disease (ALS1)
---
B/G
V
118
L
64
UniProt
VAR_045884
D
125
G
SODC_HUMAN
Disease (ALS1)
---
B/G
D
124
G
65
UniProt
VAR_008722
D
125
V
SODC_HUMAN
Disease (ALS1)
---
B/G
D
124
V
66
UniProt
VAR_007157
D
126
H
SODC_HUMAN
Disease (ALS1)
---
B/G
D
125
H
67
UniProt
VAR_013539
L
127
S
SODC_HUMAN
Disease (ALS1)
---
B/G
L
126
S
68
UniProt
VAR_007158
S
135
N
SODC_HUMAN
Disease (ALS1)
---
B/G
S
134
N
69
UniProt
VAR_007159
N
140
K
SODC_HUMAN
Disease (ALS1)
---
B/G
N
139
K
70
UniProt
VAR_007160
L
145
F
SODC_HUMAN
Disease (ALS1)
---
B/G
L
144
F
71
UniProt
VAR_008724
L
145
S
SODC_HUMAN
Disease (ALS1)
---
B/G
L
144
S
72
UniProt
VAR_008725
A
146
T
SODC_HUMAN
Disease (ALS1)
---
B/G
A
145
T
73
UniProt
VAR_013540
C
147
R
SODC_HUMAN
Disease (ALS1)
---
B/G
C
146
R
74
UniProt
VAR_045885
G
148
R
SODC_HUMAN
Disease (ALS1)
---
B/G
G
147
R
75
UniProt
VAR_007161
V
149
G
SODC_HUMAN
Disease (ALS1)
---
B/G
V
148
G
76
UniProt
VAR_007162
V
149
I
SODC_HUMAN
Disease (ALS1)
---
B/G
V
148
I
77
UniProt
VAR_007163
I
150
T
SODC_HUMAN
Disease (ALS1)
---
B/G
I
149
T
78
UniProt
VAR_007164
I
152
T
SODC_HUMAN
Disease (ALS1)
---
B/G
I
151
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: SOD_CU_ZN_1 (B:44-54,G:44-54)
2: SOD_CU_ZN_2 (B:138-149,G:138-149)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SOD_CU_ZN_1
PS00087
Copper/Zinc superoxide dismutase signature 1.
SODC_HUMAN
45-55
2
-
B:44-54
-
-
-
-
G:44-54
-
-
-
2
SOD_CU_ZN_2
PS00332
Copper/Zinc superoxide dismutase signature 2.
SODC_HUMAN
139-150
2
-
B:138-149
-
-
-
-
G:138-149
-
-
-
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 10)
Info
All SCOP Domains
1a: SCOP_d1uxla_ (A:)
1b: SCOP_d1uxlb_ (B:)
1c: SCOP_d1uxlc_ (C:)
1d: SCOP_d1uxld_ (D:)
1e: SCOP_d1uxle_ (E:)
1f: SCOP_d1uxlf_ (F:)
1g: SCOP_d1uxlg_ (G:)
1h: SCOP_d1uxlh_ (H:)
1i: SCOP_d1uxli_ (I:)
1j: SCOP_d1uxlj_ (J:)
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Protein Domains
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Organisms
(
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(
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Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Cu,Zn superoxide dismutase-like
(165)
Family
:
Cu,Zn superoxide dismutase-like
(158)
Protein domain
:
Cu,Zn superoxide dismutase, SOD
(134)
Human (Homo sapiens) [TaxId: 9606]
(69)
1a
d1uxla_
A:
1b
d1uxlb_
B:
1c
d1uxlc_
C:
1d
d1uxld_
D:
1e
d1uxle_
E:
1f
d1uxlf_
F:
1g
d1uxlg_
G:
1h
d1uxlh_
H:
1i
d1uxli_
I:
1j
d1uxlj_
J:
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CATH Domains
(1, 10)
Info
all CATH domains
1a: CATH_1uxlA00 (A:1-153)
1b: CATH_1uxlB00 (B:1-153)
1c: CATH_1uxlC00 (C:1-153)
1d: CATH_1uxlD00 (D:1-153)
1e: CATH_1uxlE00 (E:1-153)
1f: CATH_1uxlF00 (F:1-153)
1g: CATH_1uxlG00 (G:1-153)
1h: CATH_1uxlH00 (H:1-153)
1i: CATH_1uxlI00 (I:1-153)
1j: CATH_1uxlJ00 (J:1-153)
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Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.200, no name defined]
(125)
Human (Homo sapiens)
(52)
1a
1uxlA00
A:1-153
1b
1uxlB00
B:1-153
1c
1uxlC00
C:1-153
1d
1uxlD00
D:1-153
1e
1uxlE00
E:1-153
1f
1uxlF00
F:1-153
1g
1uxlG00
G:1-153
1h
1uxlH00
H:1-153
1i
1uxlI00
I:1-153
1j
1uxlJ00
J:1-153
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Pfam Domains
(1, 10)
Info
all PFAM domains
1a: PFAM_Sod_Cu_1uxlJ01 (J:4-149)
1b: PFAM_Sod_Cu_1uxlJ02 (J:4-149)
1c: PFAM_Sod_Cu_1uxlJ03 (J:4-149)
1d: PFAM_Sod_Cu_1uxlJ04 (J:4-149)
1e: PFAM_Sod_Cu_1uxlJ05 (J:4-149)
1f: PFAM_Sod_Cu_1uxlJ06 (J:4-149)
1g: PFAM_Sod_Cu_1uxlJ07 (J:4-149)
1h: PFAM_Sod_Cu_1uxlJ08 (J:4-149)
1i: PFAM_Sod_Cu_1uxlJ09 (J:4-149)
1j: PFAM_Sod_Cu_1uxlJ10 (J:4-149)
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Clan
:
no clan defined [family: Sod_Cu]
(71)
Family
:
Sod_Cu
(71)
Homo sapiens (Human)
(34)
1a
Sod_Cu-1uxlJ01
J:4-149
1b
Sod_Cu-1uxlJ02
J:4-149
1c
Sod_Cu-1uxlJ03
J:4-149
1d
Sod_Cu-1uxlJ04
J:4-149
1e
Sod_Cu-1uxlJ05
J:4-149
1f
Sod_Cu-1uxlJ06
J:4-149
1g
Sod_Cu-1uxlJ07
J:4-149
1h
Sod_Cu-1uxlJ08
J:4-149
1i
Sod_Cu-1uxlJ09
J:4-149
1j
Sod_Cu-1uxlJ10
J:4-149
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