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1UXJ
Biol. Unit 1
Info
Asym.Unit (113 KB)
Biol.Unit 1 (209 KB)
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(1)
Title
:
LARGE IMPROVEMENT IN THE THERMAL STABILITY OF A TETRAMERIC MALATE DEHYDROGENASE BY SINGLE POINT MUTATIONS AT THE DIMER-DIMER INTERFACE
Authors
:
A. Bjork, B. Dalhus, D. Mantzilas, V. G. H. Eijsink, R. Sirevag
Date
:
25 Feb 04 (Deposition) - 26 Aug 04 (Release) - 15 Apr 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A,C
Biol. Unit 1: A,C (2x)
Keywords
:
Oxidoreductase, Tricarboxylic Acid Cycle, Malate Dehydrogenase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
A. Bjork, B. Dalhus, D. Mantzilas, R. Sirevag, V. G. H. Eijsink
Large Improvement In The Thermal Stability Of A Tetrameric Malate Dehydrogenase By Single Point Mutations At The Dimer Dimer Interface.
J. Mol. Biol. V. 341 1215 2004
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: CADMIUM ION (CDa)
1b: CADMIUM ION (CDb)
1c: CADMIUM ION (CDc)
1d: CADMIUM ION (CDd)
1e: CADMIUM ION (CDe)
1f: CADMIUM ION (CDf)
1g: CADMIUM ION (CDg)
1h: CADMIUM ION (CDh)
1i: CADMIUM ION (CDi)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
4a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
4b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
3c: SODIUM ION (NAc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CD
-1
Ligand/Ion
CADMIUM ION
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
NA
-1
Ligand/Ion
SODIUM ION
4
NAD
4
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
[
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:200 , ASP A:243 , GLU A:277 , HOH A:2284
BINDING SITE FOR RESIDUE CD A1309
02
AC2
SOFTWARE
GLU A:195 , GLU A:281 , HOH A:2211 , GLU C:281 , HOH C:2278
BINDING SITE FOR RESIDUE CD A1310
03
AC3
SOFTWARE
GLU A:178 , CL A:1313 , HOH A:2154 , HOH A:2195
BINDING SITE FOR RESIDUE CD A1311
04
AC4
SOFTWARE
ASP A:148 , HIS A:175 , HOH A:2168 , HOH A:2172 , HOH A:2173
BINDING SITE FOR RESIDUE CD A1312
05
AC5
SOFTWARE
ASP A:123 , ALA A:124 , THR A:302 , CD A:1311
BINDING SITE FOR RESIDUE CL A1313
06
AC6
SOFTWARE
HIS A:19 , HOH A:2017
BINDING SITE FOR RESIDUE NA A1314
07
AC7
SOFTWARE
HOH A:2251
BINDING SITE FOR RESIDUE NA A1315
08
AC8
SOFTWARE
GLU C:178 , CL C:1314 , HOH C:2137 , HOH C:2181
BINDING SITE FOR RESIDUE CD C1311
09
AC9
SOFTWARE
GLU A:159 , ARG A:201 , HOH A:2181 , GLU C:159 , ARG C:201 , HOH C:2161
BINDING SITE FOR RESIDUE CD C1312
10
BC1
SOFTWARE
ASP C:148 , HIS C:175 , HOH C:2153 , HOH C:2176 , HOH C:2312
BINDING SITE FOR RESIDUE CD C1313
11
BC2
SOFTWARE
ASP C:123 , ALA C:124 , THR C:302 , CD C:1311
BINDING SITE FOR RESIDUE CL C1314
12
BC3
SOFTWARE
HOH A:2027 , GLU C:238
BINDING SITE FOR RESIDUE NA C1315
13
BC4
SOFTWARE
GLU A:238 , HOH A:2256 , HOH A:2257 , HOH C:2021 , HOH C:2168
BINDING SITE FOR RESIDUE CD C1316
14
BC5
SOFTWARE
HOH C:2085 , HOH C:2195 , HOH C:2251 , HOH C:2273 , HOH C:2275
BINDING SITE FOR RESIDUE CD C1317
15
BC6
SOFTWARE
GLY A:9 , GLY A:11 , PHE A:12 , VAL A:13 , ASP A:33 , ILE A:34 , VAL A:35 , TYR A:65 , THR A:77 , SER A:78 , GLY A:79 , PRO A:81 , CYS A:102 , VAL A:118 , ASN A:119 , ASN A:120 , GLN A:143 , LEU A:147 , HIS A:175 , PRO A:229 , HOH A:2118 , HOH A:2168 , HOH A:2248 , HOH A:2317 , HOH A:2318 , HOH A:2319 , HOH A:2320 , HOH A:2321 , HOH A:2322 , HOH A:2323 , HOH A:2324 , HOH A:2325
BINDING SITE FOR RESIDUE NAD A1308
16
BC7
SOFTWARE
GLY C:9 , GLY C:11 , PHE C:12 , VAL C:13 , ASP C:33 , ILE C:34 , VAL C:35 , TYR C:65 , THR C:77 , SER C:78 , GLY C:79 , ILE C:98 , CYS C:102 , VAL C:118 , ASN C:119 , ASN C:120 , GLN C:143 , LEU C:147 , HIS C:175 , PRO C:229 , HOH C:2096 , HOH C:2229 , HOH C:2230 , HOH C:2308 , HOH C:2310 , HOH C:2311 , HOH C:2312 , HOH C:2313 , HOH C:2314 , HOH C:2315
BINDING SITE FOR RESIDUE NAD C1310
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1uxja2 (A:144-307)
1b: SCOP_d1uxjc2 (C:144-307)
2a: SCOP_d1uxja1 (A:2-143)
2b: SCOP_d1uxjc1 (C:2-143)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
LDH C-terminal domain-like
(172)
Superfamily
:
LDH C-terminal domain-like
(172)
Family
:
Lactate & malate dehydrogenases, C-terminal domain
(125)
Protein domain
:
Malate dehydrogenase
(37)
Chloroflexus aurantiacus [TaxId: 1108]
(7)
1a
d1uxja2
A:144-307
1b
d1uxjc2
C:144-307
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
LDH N-terminal domain-like
(117)
Protein domain
:
Malate dehydrogenase
(39)
Chloroflexus aurantiacus [TaxId: 1108]
(7)
2a
d1uxja1
A:2-143
2b
d1uxjc1
C:2-143
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1uxjA01 (A:1-144)
1b: CATH_1uxjC01 (C:2-144)
2a: CATH_1uxjA02 (A:145-305)
2b: CATH_1uxjC02 (C:145-305)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Chloroflexus aurantiacus. Organism_taxid: 1108.
(7)
1a
1uxjA01
A:1-144
1b
1uxjC01
C:2-144
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2
(116)
Homologous Superfamily
:
L-2-Hydroxyisocaproate Dehydrogenase, subunit A, domain 2
(116)
Chloroflexus aurantiacus. Organism_taxid: 1108.
(7)
2a
1uxjA02
A:145-305
2b
1uxjC02
C:145-305
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Ldh_1_C_1uxjC01 (C:145-309)
1b: PFAM_Ldh_1_C_1uxjC02 (C:145-309)
2a: PFAM_Ldh_1_N_1uxjC03 (C:3-143)
2b: PFAM_Ldh_1_N_1uxjC04 (C:3-143)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
LDH_C
(56)
Family
:
Ldh_1_C
(51)
Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl)
(6)
1a
Ldh_1_C-1uxjC01
C:145-309
1b
Ldh_1_C-1uxjC02
C:145-309
Clan
:
NADP_Rossmann
(1239)
Family
:
Ldh_1_N
(51)
Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl)
(6)
2a
Ldh_1_N-1uxjC03
C:3-143
2b
Ldh_1_N-1uxjC04
C:3-143
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Asymmetric Unit 1
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