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1UXG
Asym. Unit
Info
Asym.Unit (108 KB)
Biol.Unit 1 (204 KB)
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(1)
Title
:
LARGE IMPROVEMENT IN THE THERMAL STABILITY OF A TETRAMERIC MALATE DEHYDROGENASE BY SINGLE POINT MUTATIONS AT THE DIMER-DIMER INTERFACE.
Authors
:
A. Bjork, B. Dalhus, D. Mantzilas, V. G. H. Eijsink, R. Sirevag
Date
:
25 Feb 04 (Deposition) - 26 Aug 04 (Release) - 15 Apr 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Oxidoreductase, Tricarboxylic Acid Cycle, Malate Dehydrogenase
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Reference
:
A. Bjork, B. Dalhus, D. Mantzilas, R. Sirevag, V. G. H. Eijsink
Large Improvement In The Thermal Stability Of A Tetrameric Malate Dehydrogenase By Single Point Mutations At The Dimer Dimer Interface.
J. Mol. Biol. V. 341 1215 2004
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: FUMARIC ACID (FUMa)
1b: FUMARIC ACID (FUMb)
2a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
2b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
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No.
Name
Count
Type
Full Name
1
FUM
2
Ligand/Ion
FUMARIC ACID
2
NAD
2
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:11 , PHE A:12 , VAL A:13 , ASP A:33 , ILE A:34 , VAL A:35 , TYR A:65 , THR A:77 , SER A:78 , GLY A:79 , ALA A:80 , PRO A:81 , ASN A:95 , CYS A:102 , VAL A:118 , ASN A:120 , GLN A:143 , LEU A:147 , HIS A:175 , PRO A:229 , FUM A:1311 , HOH A:2142 , HOH A:2199 , HOH A:2200 , HOH A:2201 , HOH A:2202 , HOH A:2203 , HOH A:2204 , HOH A:2205 , HOH A:2206
BINDING SITE FOR RESIDUE NAD A1310
2
AC2
SOFTWARE
ARG A:82 , ARG A:88 , ASN A:120 , LEU A:147 , ARG A:151 , HIS A:175 , GLY A:213 , SER A:224 , NAD A:1310 , HOH A:2206
BINDING SITE FOR RESIDUE FUM A1311
3
AC3
SOFTWARE
GLY B:9 , GLY B:11 , PHE B:12 , VAL B:13 , ASP B:33 , ILE B:34 , VAL B:35 , TYR B:65 , THR B:77 , SER B:78 , GLY B:79 , ALA B:80 , PRO B:81 , ASN B:95 , CYS B:102 , VAL B:118 , ASN B:120 , GLN B:143 , LEU B:147 , HIS B:175 , PRO B:229 , FUM B:1311 , HOH B:2009 , HOH B:2048 , HOH B:2141 , HOH B:2198 , HOH B:2199 , HOH B:2201 , HOH B:2202 , HOH B:2203 , HOH B:2204
BINDING SITE FOR RESIDUE NAD B1310
4
AC4
SOFTWARE
ARG B:82 , ARG B:88 , LEU B:147 , ARG B:151 , HIS B:175 , GLY B:213 , SER B:224 , NAD B:1310 , HOH B:2129 , HOH B:2204
BINDING SITE FOR RESIDUE FUM B1311
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1uxga2 (A:144-307)
1b: SCOP_d1uxgb2 (B:144-307)
2a: SCOP_d1uxga1 (A:2-143)
2b: SCOP_d1uxgb1 (B:2-143)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
LDH C-terminal domain-like
(172)
Superfamily
:
LDH C-terminal domain-like
(172)
Family
:
Lactate & malate dehydrogenases, C-terminal domain
(125)
Protein domain
:
Malate dehydrogenase
(37)
Chloroflexus aurantiacus [TaxId: 1108]
(7)
1a
d1uxga2
A:144-307
1b
d1uxgb2
B:144-307
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
LDH N-terminal domain-like
(117)
Protein domain
:
Malate dehydrogenase
(39)
Chloroflexus aurantiacus [TaxId: 1108]
(7)
2a
d1uxga1
A:2-143
2b
d1uxgb1
B:2-143
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1uxgA01 (A:2-144)
1b: CATH_1uxgB01 (B:2-144)
2a: CATH_1uxgA02 (A:145-305)
2b: CATH_1uxgB02 (B:145-305)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Chloroflexus aurantiacus. Organism_taxid: 1108.
(7)
1a
1uxgA01
A:2-144
1b
1uxgB01
B:2-144
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2
(116)
Homologous Superfamily
:
L-2-Hydroxyisocaproate Dehydrogenase, subunit A, domain 2
(116)
Chloroflexus aurantiacus. Organism_taxid: 1108.
(7)
2a
1uxgA02
A:145-305
2b
1uxgB02
B:145-305
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Ldh_1_C_1uxgB01 (B:145-309)
1b: PFAM_Ldh_1_C_1uxgB02 (B:145-309)
2a: PFAM_Ldh_1_N_1uxgB03 (B:3-143)
2b: PFAM_Ldh_1_N_1uxgB04 (B:3-143)
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)
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)
Clan
:
LDH_C
(56)
Family
:
Ldh_1_C
(51)
Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl)
(6)
1a
Ldh_1_C-1uxgB01
B:145-309
1b
Ldh_1_C-1uxgB02
B:145-309
Clan
:
NADP_Rossmann
(1239)
Family
:
Ldh_1_N
(51)
Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl)
(6)
2a
Ldh_1_N-1uxgB03
B:3-143
2b
Ldh_1_N-1uxgB04
B:3-143
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Asym.Unit (108 KB)
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