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1UX2
Asym. Unit
Info
Asym.Unit (372 KB)
Biol.Unit 1 (184 KB)
Biol.Unit 2 (185 KB)
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(1)
Title
:
X-RAY STRUCTURE OF ACETYLCHOLINE BINDING PROTEIN (ACHBP)
Authors
:
P. H. N. Celie, S. E. Van Rossum-Fikkert, W. J. Van Dijk, K. Brejc, A. B. Smit, T. K. Sixma
Date
:
18 Feb 04 (Deposition) - 25 Mar 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A,B,C,D,E (1x)
Biol. Unit 2: F,G,H,I,J (1x)
Keywords
:
Pentamer, Igg Fold, Acetylcholine, Nicotine, Glycoprotein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. H. N. Celie, S. E. Van Rossum-Fikkert, W. J. Van Dijk, K. Brejc, A. B. Smit, T. K. Sixma
Nicotine And Carbamylcholine Binding To Nicotinic Acetylcholine Receptors As Studied In Achbp Crystal Structures
Neuron V. 41 907 2004
(for further references see the
PDB file header
)
[
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Hetero Components
(4, 24)
Info
All Hetero Components
1a: 4-(2-HYDROXYETHYL)-1-PIPERAZINEETH... (EPEa)
1b: 4-(2-HYDROXYETHYL)-1-PIPERAZINEETH... (EPEb)
1c: 4-(2-HYDROXYETHYL)-1-PIPERAZINEETH... (EPEc)
1d: 4-(2-HYDROXYETHYL)-1-PIPERAZINEETH... (EPEd)
1e: 4-(2-HYDROXYETHYL)-1-PIPERAZINEETH... (EPEe)
1f: 4-(2-HYDROXYETHYL)-1-PIPERAZINEETH... (EPEf)
1g: 4-(2-HYDROXYETHYL)-1-PIPERAZINEETH... (EPEg)
1h: 4-(2-HYDROXYETHYL)-1-PIPERAZINEETH... (EPEh)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
2f: N-ACETYL-D-GLUCOSAMINE (NAGf)
2g: N-ACETYL-D-GLUCOSAMINE (NAGg)
2h: N-ACETYL-D-GLUCOSAMINE (NAGh)
2i: N-ACETYL-D-GLUCOSAMINE (NAGi)
2j: N-ACETYL-D-GLUCOSAMINE (NAGj)
3a: AMMONIUM ION (NH4a)
3b: AMMONIUM ION (NH4b)
3c: AMMONIUM ION (NH4c)
3d: AMMONIUM ION (NH4d)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EPE
8
Ligand/Ion
4-(2-HYDROXYETHYL)-1-PIPERAZINEETHANESULFONIC ACID
2
NAG
10
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
3
NH4
4
Ligand/Ion
AMMONIUM ION
4
SO4
2
Ligand/Ion
SULFATE ION
[
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Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:0 , ASN A:66 , SER A:68 , HOH A:2133 , ARG H:61 , NAG H:1207
BINDING SITE FOR RESIDUE NAG A1207
02
AC2
SOFTWARE
ASN B:66 , SER B:68 , HOH B:2138 , NAG G:1209
BINDING SITE FOR RESIDUE NAG B1209
03
AC3
SOFTWARE
GLU C:0 , ASN C:66 , SER C:68 , HIS C:69 , HOH C:2145 , HOH C:2146
BINDING SITE FOR RESIDUE NAG C1207
04
AC4
SOFTWARE
GLU D:0 , ASN D:66 , SER D:68 , HIS D:69 , HOH D:2142 , HOH J:2057
BINDING SITE FOR RESIDUE NAG D1207
05
AC5
SOFTWARE
GLU E:0 , ASN E:66 , SER E:68 , HOH E:2130
BINDING SITE FOR RESIDUE NAG E1207
06
AC6
SOFTWARE
ARG C:61 , ASN F:66 , SER F:68 , HOH F:2003 , HOH F:2146 , HOH F:2147
BINDING SITE FOR RESIDUE NAG F1207
07
AC7
SOFTWARE
NAG B:1209 , HOH B:2062 , GLU G:0 , ASN G:66 , SER G:68 , HOH G:2163
BINDING SITE FOR RESIDUE NAG G1209
08
AC8
SOFTWARE
NAG A:1207 , GLU H:0 , ASN H:66 , SER H:68 , HOH H:2003
BINDING SITE FOR RESIDUE NAG H1207
09
AC9
SOFTWARE
ARG E:61 , ASN I:66 , SER I:68 , HOH I:2138
BINDING SITE FOR RESIDUE NAG I1207
10
BC1
SOFTWARE
ARG D:61 , GLU J:0 , ASN J:66 , SER J:68 , HOH J:2058 , HOH J:2124
BINDING SITE FOR RESIDUE NAG J1207
11
BC2
SOFTWARE
SER B:142 , TRP B:143 , NH4 B:1207 , NH4 B:1208
BINDING SITE FOR RESIDUE SO4 B1206
12
BC3
SOFTWARE
TYR B:89 , TRP B:143 , SO4 B:1206
BINDING SITE FOR RESIDUE NH4 B1207
13
BC4
SOFTWARE
TRP B:143 , SO4 B:1206 , HOH B:2137 , MET C:114
BINDING SITE FOR RESIDUE NH4 B1208
14
BC5
SOFTWARE
TRP G:143 , TYR G:192 , NH4 G:1207 , NH4 G:1208 , TRP H:53 , MET H:114
BINDING SITE FOR RESIDUE SO4 G1206
15
BC6
SOFTWARE
TYR G:89 , TYR G:185 , SO4 G:1206
BINDING SITE FOR RESIDUE NH4 G1207
16
BC7
SOFTWARE
SO4 G:1206 , HOH G:2162 , MET H:114
BINDING SITE FOR RESIDUE NH4 G1208
17
BC8
SOFTWARE
TYR A:89 , TRP A:143 , TYR A:185 , TYR A:192 , TRP B:53 , MET B:114 , TYR B:164
BINDING SITE FOR RESIDUE EPE A1206
18
BC9
SOFTWARE
TYR C:89 , TRP C:143 , TYR C:185 , TYR C:192 , HOH C:2083 , HOH C:2144 , TRP D:53 , MET D:114
BINDING SITE FOR RESIDUE EPE C1206
19
CC1
SOFTWARE
TYR D:89 , TRP D:143 , TYR D:185 , CYS D:188 , TYR D:192 , HOH D:2106 , TRP E:53 , LEU E:112 , MET E:114
BINDING SITE FOR RESIDUE EPE D1206
20
CC2
SOFTWARE
TRP A:53 , MET A:114 , TYR E:89 , TRP E:143 , TYR E:185
BINDING SITE FOR RESIDUE EPE E1206
21
CC3
SOFTWARE
TYR F:89 , TRP F:143 , TYR F:185 , CYS F:188 , TYR F:192 , HOH F:2145 , TRP G:53 , LEU G:112 , MET G:114
BINDING SITE FOR RESIDUE EPE F1206
22
CC4
SOFTWARE
TYR H:89 , TRP H:143 , TYR H:185 , TYR H:192 , HOH H:2069 , TRP I:53 , MET I:114 , TYR I:164
BINDING SITE FOR RESIDUE EPE H1206
23
CC5
SOFTWARE
TYR I:89 , TRP I:143 , THR I:144 , TYR I:185 , TYR I:192 , HOH I:2137 , TRP J:53 , ARG J:104 , LEU J:112 , MET J:114
BINDING SITE FOR RESIDUE EPE I1206
24
CC6
SOFTWARE
TRP F:53 , MET F:114 , TYR J:89 , TRP J:143 , TYR J:185 , TYR J:192 , HOH J:2075 , HOH J:2123
BINDING SITE FOR RESIDUE EPE J1206
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 10)
Info
All SCOP Domains
1a: SCOP_d1ux2a_ (A:)
1b: SCOP_d1ux2b_ (B:)
1c: SCOP_d1ux2c_ (C:)
1d: SCOP_d1ux2d_ (D:)
1e: SCOP_d1ux2e_ (E:)
1f: SCOP_d1ux2f_ (F:)
1g: SCOP_d1ux2g_ (G:)
1h: SCOP_d1ux2h_ (H:)
1i: SCOP_d1ux2i_ (I:)
1j: SCOP_d1ux2j_ (J:)
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(
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Folds
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)
(
)
Superfamilies
(
)
(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Nicotinic receptor ligand binding domain-like
(58)
Superfamily
:
Nicotinic receptor ligand binding domain-like
(58)
Family
:
Nicotinic receptor ligand binding domain-like
(18)
Protein domain
:
Acetylcholine binding protein (ACHBP)
(7)
Great pond snail (Lymnaea stagnalis) [TaxId: 6523]
(7)
1a
d1ux2a_
A:
1b
d1ux2b_
B:
1c
d1ux2c_
C:
1d
d1ux2d_
D:
1e
d1ux2e_
E:
1f
d1ux2f_
F:
1g
d1ux2g_
G:
1h
d1ux2h_
H:
1i
d1ux2i_
I:
1j
d1ux2j_
J:
[
close SCOP info
]
CATH Domains
(1, 10)
Info
all CATH domains
1a: CATH_1ux2B00 (B:0-205)
1b: CATH_1ux2E00 (E:0-205)
1c: CATH_1ux2G00 (G:0-205)
1d: CATH_1ux2I00 (I:0-205)
1e: CATH_1ux2J00 (J:0-205)
1f: CATH_1ux2A00 (A:-1-205)
1g: CATH_1ux2C00 (C:-1-205)
1h: CATH_1ux2D00 (D:-1-205)
1i: CATH_1ux2F00 (F:-1-205)
1j: CATH_1ux2H00 (H:-1-205)
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Topologies
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Distorted Sandwich
(506)
Topology
:
Acetylcholine Binding Protein; Chain: A,
(12)
Homologous Superfamily
:
[code=2.70.170.10, no name defined]
(12)
Great pond snail (Lymnaea stagnalis)
(6)
1a
1ux2B00
B:0-205
1b
1ux2E00
E:0-205
1c
1ux2G00
G:0-205
1d
1ux2I00
I:0-205
1e
1ux2J00
J:0-205
1f
1ux2A00
A:-1-205
1g
1ux2C00
C:-1-205
1h
1ux2D00
D:-1-205
1i
1ux2F00
F:-1-205
1j
1ux2H00
H:-1-205
[
close CATH info
]
Pfam Domains
(1, 10)
Info
all PFAM domains
1a: PFAM_Neur_chan_LBD_1ux2J01 (J:3-205)
1b: PFAM_Neur_chan_LBD_1ux2J02 (J:3-205)
1c: PFAM_Neur_chan_LBD_1ux2J03 (J:3-205)
1d: PFAM_Neur_chan_LBD_1ux2J04 (J:3-205)
1e: PFAM_Neur_chan_LBD_1ux2J05 (J:3-205)
1f: PFAM_Neur_chan_LBD_1ux2J06 (J:3-205)
1g: PFAM_Neur_chan_LBD_1ux2J07 (J:3-205)
1h: PFAM_Neur_chan_LBD_1ux2J08 (J:3-205)
1i: PFAM_Neur_chan_LBD_1ux2J09 (J:3-205)
1j: PFAM_Neur_chan_LBD_1ux2J10 (J:3-205)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Neur_chan_LBD]
(30)
Family
:
Neur_chan_LBD
(30)
Lymnaea stagnalis (Great pond snail)
(5)
1a
Neur_chan_LBD-1ux2J01
J:3-205
1b
Neur_chan_LBD-1ux2J02
J:3-205
1c
Neur_chan_LBD-1ux2J03
J:3-205
1d
Neur_chan_LBD-1ux2J04
J:3-205
1e
Neur_chan_LBD-1ux2J05
J:3-205
1f
Neur_chan_LBD-1ux2J06
J:3-205
1g
Neur_chan_LBD-1ux2J07
J:3-205
1h
Neur_chan_LBD-1ux2J08
J:3-205
1i
Neur_chan_LBD-1ux2J09
J:3-205
1j
Neur_chan_LBD-1ux2J10
J:3-205
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Asym.Unit (372 KB)
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