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1UWG
Asym. Unit
Info
Asym.Unit (138 KB)
Biol.Unit 1 (67 KB)
Biol.Unit 2 (67 KB)
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(1)
Title
:
MOLECULAR MECHANISM OF ENANTIOSELECTIVE PROTON TRANSFER TO CARBON IN CATALYTIC ANTIBODY 14D9
Authors
:
U. Baumann, J. L. Reymond
Date
:
05 Feb 04 (Deposition) - 27 Feb 04 (Release) - 15 Mar 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.79
Chains
:
Asym. Unit : H,L,X,Y
Biol. Unit 1: H,L (1x)
Biol. Unit 2: X,Y (1x)
Keywords
:
Antibody, Catalytic Antibody
(Keyword Search:
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Reference
:
L. Zheng, U. Baumannn, J. L. Reymond
Molecular Mechanism Of Enantioselective Proton Transfer To Carbon In Catalytic Antibody 14D9
Proc. Natl. Acad. Sci. Usa V. 101 3387 2004
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: 1-(4-{[(2-HYDROXYETHYL)AMINO]CARBO... (KHAa)
1b: 1-(4-{[(2-HYDROXYETHYL)AMINO]CARBO... (KHAb)
2a: PHOSPHATE ION (PO4a)
2b: PHOSPHATE ION (PO4b)
2c: PHOSPHATE ION (PO4c)
2d: PHOSPHATE ION (PO4d)
2e: PHOSPHATE ION (PO4e)
2f: PHOSPHATE ION (PO4f)
View:
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Label:
No.
Name
Count
Type
Full Name
1
KHA
2
Ligand/Ion
1-(4-{[(2-HYDROXYETHYL)AMINO]CARBONYL}BENZYL)-1-METHYLPIPERIDINIUM
2
PO4
6
Ligand/Ion
PHOSPHATE ION
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ILE H:51 , PRO H:57 , THR H:70 , VAL H:71
BINDING SITE FOR RESIDUE PO4 H 1216
2
AC2
SOFTWARE
GLN L:27 , ASN L:28 , HOH L:2022 , HOH L:2023
BINDING SITE FOR RESIDUE PO4 L 1214
3
AC3
SOFTWARE
GLY L:30 , THR L:31 , HIS L:32 , LYS L:183 , ALA L:184
BINDING SITE FOR RESIDUE PO4 L 1215
4
AC4
SOFTWARE
THR H:183 , SER L:114 , PHE L:116 , ASN L:137
BINDING SITE FOR RESIDUE PO4 L 1216
5
AC5
SOFTWARE
LYS L:9 , PHE L:10 , LYS X:107
BINDING SITE FOR RESIDUE PO4 L 1217
6
AC6
SOFTWARE
LYS L:107 , LYS X:9 , PHE X:10
BINDING SITE FOR RESIDUE PO4 X 1214
7
AC7
SOFTWARE
ASN H:33 , TYR H:35 , TRP H:47 , ILE H:51 , ASP H:52 , PHE H:98 , ASP H:101 , TYR L:55 , PHE L:94
BINDING SITE FOR RESIDUE KHA H 1215
8
AC8
SOFTWARE
TYR X:55 , GLN X:89 , PHE X:94 , ASN Y:33 , TYR Y:35 , TRP Y:47 , ASP Y:52 , PHE Y:98 , ASP Y:101 , HOH Y:2022
BINDING SITE FOR RESIDUE KHA Y 1215
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(4, 8)
Info
All SCOP Domains
1a: SCOP_d1uwgh2 (H:114-215)
1b: SCOP_d1uwgy2 (Y:114-215)
2a: SCOP_d1uwgl2 (L:108-213)
2b: SCOP_d1uwgx2 (X:108-213)
3a: SCOP_d1uwgh1 (H:3-113)
3b: SCOP_d1uwgy1 (Y:3-113)
4a: SCOP_d1uwgl1 (L:1-107)
4b: SCOP_d1uwgx1 (X:1-107)
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)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
(608)
Human (Homo sapiens) [TaxId: 9606]
(179)
1a
d1uwgh2
H:114-215
1b
d1uwgy2
Y:114-215
Protein domain
:
Immunoglobulin light chain kappa constant domain, CL-kappa
(495)
Human (Homo sapiens) [TaxId: 9606]
(144)
2a
d1uwgl2
L:108-213
2b
d1uwgx2
X:108-213
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
Immunoglobulin heavy chain variable domain, VH
(658)
Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
(177)
3a
d1uwgh1
H:3-113
3b
d1uwgy1
Y:3-113
Protein domain
:
Immunoglobulin light chain kappa variable domain, VL-kappa
(616)
Mouse (Mus musculus), cluster 4 [TaxId: 10090]
(211)
4a
d1uwgl1
L:1-107
4b
d1uwgx1
X:1-107
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1uwgL02 (L:109-213)
1b: CATH_1uwgX02 (X:109-213)
1c: CATH_1uwgL01 (L:1-108)
1d: CATH_1uwgX01 (X:1-108)
1e: CATH_1uwgH02 (H:114-215)
1f: CATH_1uwgY02 (Y:114-215)
1g: CATH_1uwgH01 (H:3-113)
1h: CATH_1uwgY01 (Y:3-113)
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Organisms
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Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Mouse, human (Mus musculus, homo sapiens)
(6)
1a
1uwgL02
L:109-213
1b
1uwgX02
X:109-213
1c
1uwgL01
L:1-108
1d
1uwgX01
X:1-108
1e
1uwgH02
H:114-215
1f
1uwgY02
Y:114-215
1g
1uwgH01
H:3-113
1h
1uwgY01
Y:3-113
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Pfam Domains
(0, 0)
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Asym.Unit (138 KB)
Header - Asym.Unit
Biol.Unit 1 (67 KB)
Header - Biol.Unit 1
Biol.Unit 2 (67 KB)
Header - Biol.Unit 2
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