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1UW9
Asym. Unit
Info
Asym.Unit (844 KB)
Biol.Unit 1 (829 KB)
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(1)
Title
:
L290F-A222T CHLAMYDOMONAS RUBISCO MUTANT
Authors
:
S. Karkehabadi, T. C. Taylor, R. J. Spreitzer, I. Andersson
Date
:
03 Feb 04 (Deposition) - 12 Jan 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.05
Chains
:
Asym. Unit : A,B,C,E,F,H,I,J,K,M,O,P,R,T,V,W
Biol. Unit 1: A,B,C,E,F,H,I,J,K,M,O,P,R,T,V,W (1x)
Keywords
:
Lyase, Rubisco, Photosynthesis, Photorespiration, Oxidoreductase, Monooxygenase, Carbon Dioxide Fixation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Karkehabadi, T. C. Taylor, R. J. Spreitzer, I. Andersson
Altered Intersubunit Interactions In Crystal Structures Of Catalytically Compromised Ribulose-1, 5-Bisphosphate Carboxylase/Oxygenase
Biochemistry V. 44 113 2005
[
close entry info
]
Hetero Components
(6, 111)
Info
All Hetero Components
1a: 2-CARBOXYARABINITOL-1,5-DIPHOSPHAT... (CAPa)
1b: 2-CARBOXYARABINITOL-1,5-DIPHOSPHAT... (CAPb)
1c: 2-CARBOXYARABINITOL-1,5-DIPHOSPHAT... (CAPc)
1d: 2-CARBOXYARABINITOL-1,5-DIPHOSPHAT... (CAPd)
1e: 2-CARBOXYARABINITOL-1,5-DIPHOSPHAT... (CAPe)
1f: 2-CARBOXYARABINITOL-1,5-DIPHOSPHAT... (CAPf)
1g: 2-CARBOXYARABINITOL-1,5-DIPHOSPHAT... (CAPg)
1h: 2-CARBOXYARABINITOL-1,5-DIPHOSPHAT... (CAPh)
2a: 1,2-ETHANEDIOL (EDOa)
2aa: 1,2-ETHANEDIOL (EDOaa)
2ab: 1,2-ETHANEDIOL (EDOab)
2ac: 1,2-ETHANEDIOL (EDOac)
2ad: 1,2-ETHANEDIOL (EDOad)
2ae: 1,2-ETHANEDIOL (EDOae)
2af: 1,2-ETHANEDIOL (EDOaf)
2ag: 1,2-ETHANEDIOL (EDOag)
2ah: 1,2-ETHANEDIOL (EDOah)
2ai: 1,2-ETHANEDIOL (EDOai)
2aj: 1,2-ETHANEDIOL (EDOaj)
2ak: 1,2-ETHANEDIOL (EDOak)
2al: 1,2-ETHANEDIOL (EDOal)
2am: 1,2-ETHANEDIOL (EDOam)
2an: 1,2-ETHANEDIOL (EDOan)
2ao: 1,2-ETHANEDIOL (EDOao)
2ap: 1,2-ETHANEDIOL (EDOap)
2aq: 1,2-ETHANEDIOL (EDOaq)
2ar: 1,2-ETHANEDIOL (EDOar)
2as: 1,2-ETHANEDIOL (EDOas)
2at: 1,2-ETHANEDIOL (EDOat)
2au: 1,2-ETHANEDIOL (EDOau)
2av: 1,2-ETHANEDIOL (EDOav)
2aw: 1,2-ETHANEDIOL (EDOaw)
2ax: 1,2-ETHANEDIOL (EDOax)
2ay: 1,2-ETHANEDIOL (EDOay)
2az: 1,2-ETHANEDIOL (EDOaz)
2b: 1,2-ETHANEDIOL (EDOb)
2ba: 1,2-ETHANEDIOL (EDOba)
2bb: 1,2-ETHANEDIOL (EDObb)
2bc: 1,2-ETHANEDIOL (EDObc)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
2o: 1,2-ETHANEDIOL (EDOo)
2p: 1,2-ETHANEDIOL (EDOp)
2q: 1,2-ETHANEDIOL (EDOq)
2r: 1,2-ETHANEDIOL (EDOr)
2s: 1,2-ETHANEDIOL (EDOs)
2t: 1,2-ETHANEDIOL (EDOt)
2u: 1,2-ETHANEDIOL (EDOu)
2v: 1,2-ETHANEDIOL (EDOv)
2w: 1,2-ETHANEDIOL (EDOw)
2x: 1,2-ETHANEDIOL (EDOx)
2y: 1,2-ETHANEDIOL (EDOy)
2z: 1,2-ETHANEDIOL (EDOz)
3a: 4-HYDROXYPROLINE (HYPa)
3b: 4-HYDROXYPROLINE (HYPb)
3c: 4-HYDROXYPROLINE (HYPc)
3d: 4-HYDROXYPROLINE (HYPd)
3e: 4-HYDROXYPROLINE (HYPe)
3f: 4-HYDROXYPROLINE (HYPf)
3g: 4-HYDROXYPROLINE (HYPg)
3h: 4-HYDROXYPROLINE (HYPh)
3i: 4-HYDROXYPROLINE (HYPi)
3j: 4-HYDROXYPROLINE (HYPj)
3k: 4-HYDROXYPROLINE (HYPk)
3l: 4-HYDROXYPROLINE (HYPl)
3m: 4-HYDROXYPROLINE (HYPm)
3n: 4-HYDROXYPROLINE (HYPn)
3o: 4-HYDROXYPROLINE (HYPo)
3p: 4-HYDROXYPROLINE (HYPp)
4a: LYSINE NZ-CARBOXYLIC ACID (KCXa)
4b: LYSINE NZ-CARBOXYLIC ACID (KCXb)
4c: LYSINE NZ-CARBOXYLIC ACID (KCXc)
4d: LYSINE NZ-CARBOXYLIC ACID (KCXd)
4e: LYSINE NZ-CARBOXYLIC ACID (KCXe)
4f: LYSINE NZ-CARBOXYLIC ACID (KCXf)
4g: LYSINE NZ-CARBOXYLIC ACID (KCXg)
4h: LYSINE NZ-CARBOXYLIC ACID (KCXh)
5a: MAGNESIUM ION (MGa)
5b: MAGNESIUM ION (MGb)
5c: MAGNESIUM ION (MGc)
5d: MAGNESIUM ION (MGd)
5e: MAGNESIUM ION (MGe)
5f: MAGNESIUM ION (MGf)
5g: MAGNESIUM ION (MGg)
5h: MAGNESIUM ION (MGh)
6a: S-METHYLCYSTEINE (SMCa)
6b: S-METHYLCYSTEINE (SMCb)
6c: S-METHYLCYSTEINE (SMCc)
6d: S-METHYLCYSTEINE (SMCd)
6e: S-METHYLCYSTEINE (SMCe)
6f: S-METHYLCYSTEINE (SMCf)
6g: S-METHYLCYSTEINE (SMCg)
6h: S-METHYLCYSTEINE (SMCh)
6i: S-METHYLCYSTEINE (SMCi)
6j: S-METHYLCYSTEINE (SMCj)
6k: S-METHYLCYSTEINE (SMCk)
6l: S-METHYLCYSTEINE (SMCl)
6m: S-METHYLCYSTEINE (SMCm)
6n: S-METHYLCYSTEINE (SMCn)
6o: S-METHYLCYSTEINE (SMCo)
6p: S-METHYLCYSTEINE (SMCp)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CAP
8
Ligand/Ion
2-CARBOXYARABINITOL-1,5-DIPHOSPHATE
2
EDO
55
Ligand/Ion
1,2-ETHANEDIOL
3
HYP
16
Mod. Amino Acid
4-HYDROXYPROLINE
4
KCX
8
Mod. Amino Acid
LYSINE NZ-CARBOXYLIC ACID
5
MG
8
Ligand/Ion
MAGNESIUM ION
6
SMC
16
Mod. Amino Acid
S-METHYLCYSTEINE
[
close Hetero Component info
]
Sites
(71, 71)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
57: GC3 (SOFTWARE)
58: GC4 (SOFTWARE)
59: GC5 (SOFTWARE)
60: GC6 (SOFTWARE)
61: GC7 (SOFTWARE)
62: GC8 (SOFTWARE)
63: GC9 (SOFTWARE)
64: HC1 (SOFTWARE)
65: HC2 (SOFTWARE)
66: HC3 (SOFTWARE)
67: HC4 (SOFTWARE)
68: HC5 (SOFTWARE)
69: HC6 (SOFTWARE)
70: HC7 (SOFTWARE)
71: HC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:177 , KCX A:201 , ASP A:203 , GLU A:204 , CAP A:1477
BINDING SITE FOR RESIDUE MG A1476
02
AC2
SOFTWARE
LYS B:177 , KCX B:201 , ASP B:203 , GLU B:204 , CAP B:1477
BINDING SITE FOR RESIDUE MG B1476
03
AC3
SOFTWARE
KCX E:201 , ASP E:203 , GLU E:204 , CAP E:1477
BINDING SITE FOR RESIDUE MG E1476
04
AC4
SOFTWARE
LYS H:177 , KCX H:201 , ASP H:203 , GLU H:204 , CAP O:1478
BINDING SITE FOR RESIDUE MG H1476
05
AC5
SOFTWARE
LYS K:177 , KCX K:201 , ASP K:203 , GLU K:204 , CAP R:1478
BINDING SITE FOR RESIDUE MG K1476
06
AC6
SOFTWARE
KCX O:201 , ASP O:203 , GLU O:204 , CAP O:1476
BINDING SITE FOR RESIDUE MG O1477
07
AC7
SOFTWARE
KCX R:201 , ASP R:203 , GLU R:204 , CAP R:1476
BINDING SITE FOR RESIDUE MG R1477
08
AC8
SOFTWARE
LYS V:177 , KCX V:201 , ASP V:203 , GLU V:204 , CAP V:1476
BINDING SITE FOR RESIDUE MG V1477
09
AC9
SOFTWARE
THR A:173 , LYS A:175 , LYS A:177 , KCX A:201 , ASP A:203 , GLU A:204 , HIS A:294 , ARG A:295 , HIS A:327 , LYS A:334 , LEU A:335 , SER A:379 , GLY A:380 , GLY A:381 , GLY A:403 , GLY A:404 , MG A:1476 , HOH A:2162 , HOH A:2216 , HOH A:2217 , HOH A:2271 , HOH A:2272 , HOH A:2273 , HOH A:2274 , GLU B:60 , THR B:65 , TRP B:66 , ASN B:123
BINDING SITE FOR RESIDUE CAP A1477
10
BC1
SOFTWARE
TYR A:24 , THR A:68 , VAL A:69 , ASP A:72 , EDO A:1479 , HOH A:2042 , HOH A:2275 , HOH A:2277
BINDING SITE FOR RESIDUE EDO A1478
11
BC2
SOFTWARE
LYS A:18 , THR A:65 , TRP A:66 , THR A:67 , THR A:68 , EDO A:1478 , HOH A:2276 , HOH A:2277
BINDING SITE FOR RESIDUE EDO A1479
12
BC3
SOFTWARE
GLU A:52 , ALA A:129 , HOH B:2273
BINDING SITE FOR RESIDUE EDO A1480
13
BC4
SOFTWARE
LYS A:466 , GLU A:468 , PHE A:469 , HOH A:2278
BINDING SITE FOR RESIDUE EDO A1481
14
BC5
SOFTWARE
PHE A:311 , GLU A:336 , ASP A:473 , HOH A:2164 , HOH A:2268 , HOH A:2279 , HOH A:2280
BINDING SITE FOR RESIDUE EDO A1482
15
BC6
SOFTWARE
LEU A:270 , HOH A:2152 , HOH A:2281 , HOH A:2282 , HOH A:2283 , LEU B:270
BINDING SITE FOR RESIDUE EDO A1483
16
BC7
SOFTWARE
GLU A:60 , THR A:65 , TRP A:66 , ASN A:123 , HOH A:2081 , THR B:173 , LYS B:175 , LYS B:177 , KCX B:201 , ASP B:203 , GLU B:204 , HIS B:294 , ARG B:295 , HIS B:327 , LYS B:334 , LEU B:335 , SER B:379 , GLY B:380 , GLY B:381 , GLY B:403 , GLY B:404 , MG B:1476 , HOH B:2105 , HOH B:2263 , HOH B:2264 , HOH B:2265 , HOH B:2266 , HOH B:2267 , HOH B:2268
BINDING SITE FOR RESIDUE CAP B1477
17
BC8
SOFTWARE
TYR B:24 , THR B:68 , VAL B:69 , ASP B:72 , LEU B:77 , HOH B:2269 , HOH B:2270 , HOH B:2271
BINDING SITE FOR RESIDUE EDO B1478
18
BC9
SOFTWARE
VAL B:17 , LYS B:18 , THR B:65 , TRP B:66 , THR B:67 , THR B:68 , HOH B:2018 , HOH B:2271
BINDING SITE FOR RESIDUE EDO B1479
19
CC1
SOFTWARE
HOH A:2278 , GLU B:52
BINDING SITE FOR RESIDUE EDO B1480
20
CC2
SOFTWARE
LYS B:466 , GLU B:468 , PHE B:469 , HOH B:2273
BINDING SITE FOR RESIDUE EDO B1481
21
CC3
SOFTWARE
HIS B:298 , PHE B:311 , GLU B:336 , ASP B:473 , HOH B:2195 , HOH B:2274 , HOH B:2275 , HOH B:2276
BINDING SITE FOR RESIDUE EDO B1482
22
CC4
SOFTWARE
LYS C:49 , GLU C:55 , TYR V:226 , LYS V:227
BINDING SITE FOR RESIDUE EDO C1141
23
CC5
SOFTWARE
GLY C:37 , TRP C:38 , ILE C:39 , PHE C:81 , GLY C:82 , CYS C:83 , HOH C:2080
BINDING SITE FOR RESIDUE EDO C1142
24
CC6
SOFTWARE
THR E:173 , LYS E:175 , LYS E:177 , KCX E:201 , ASP E:203 , GLU E:204 , HIS E:294 , ARG E:295 , HIS E:327 , LYS E:334 , LEU E:335 , SER E:379 , GLY E:380 , GLY E:381 , GLY E:403 , GLY E:404 , MG E:1476 , HOH E:2165 , HOH E:2219 , HOH E:2275 , HOH E:2276 , HOH E:2277 , HOH E:2278 , GLU K:60 , THR K:65 , TRP K:66 , ASN K:123 , HOH K:2028 , HOH K:2063
BINDING SITE FOR RESIDUE CAP E1477
25
CC7
SOFTWARE
TYR E:24 , GLY E:64 , THR E:68 , VAL E:69 , ASP E:72 , HOH E:2039 , HOH E:2045 , HOH E:2279
BINDING SITE FOR RESIDUE EDO E1478
26
CC8
SOFTWARE
VAL E:17 , LYS E:18 , TYR E:20 , THR E:65 , TRP E:66 , THR E:67 , THR E:68 , HOH E:2279 , HOH E:2280
BINDING SITE FOR RESIDUE EDO E1479
27
CC9
SOFTWARE
GLU E:52 , HOH K:2250
BINDING SITE FOR RESIDUE EDO E1480
28
DC1
SOFTWARE
LYS E:466 , PHE E:467 , GLU E:468 , PHE E:469 , HOH E:2281
BINDING SITE FOR RESIDUE EDO E1481
29
DC2
SOFTWARE
LEU E:270 , HOH E:2282 , HOH E:2283 , HOH E:2284 , HOH E:2285 , LEU K:270
BINDING SITE FOR RESIDUE EDO E1482
30
DC3
SOFTWARE
LEU H:270 , HOH H:2263 , HOH H:2264 , LEU R:270
BINDING SITE FOR RESIDUE EDO H1477
31
DC4
SOFTWARE
TYR H:24 , THR H:68 , VAL H:69 , ASP H:72 , EDO H:1479 , HOH H:2265 , HOH H:2266 , HOH H:2267
BINDING SITE FOR RESIDUE EDO H1478
32
DC5
SOFTWARE
LYS H:18 , THR H:65 , TRP H:66 , THR H:67 , THR H:68 , EDO H:1478 , HOH H:2019 , HOH H:2267
BINDING SITE FOR RESIDUE EDO H1479
33
DC6
SOFTWARE
GLU H:52 , HOH R:2260
BINDING SITE FOR RESIDUE EDO H1480
34
DC7
SOFTWARE
LYS H:466 , GLU H:468 , PHE H:469 , HOH H:2268 , HOH H:2269
BINDING SITE FOR RESIDUE EDO H1481
35
DC8
SOFTWARE
HIS H:298 , PHE H:311 , GLU H:336 , ASP H:473 , HOH H:2173 , HOH H:2190 , HOH H:2270 , HOH H:2271
BINDING SITE FOR RESIDUE EDO H1482
36
DC9
SOFTWARE
LYS I:49 , GLU I:55 , ASP I:69 , HOH I:2034 , TYR K:226 , LYS K:227
BINDING SITE FOR RESIDUE EDO I1141
37
EC1
SOFTWARE
TYR E:226 , LYS E:227 , HOH E:2134 , LYS J:49 , GLU J:55 , HOH J:2038 , HOH J:2040
BINDING SITE FOR RESIDUE EDO J1141
38
EC2
SOFTWARE
GLY J:37 , TRP J:38 , ILE J:39 , PHE J:81 , GLY J:82 , CYS J:83 , HOH J:2074
BINDING SITE FOR RESIDUE EDO J1142
39
EC3
SOFTWARE
TYR K:24 , GLY K:64 , THR K:68 , VAL K:69 , ASP K:72 , LEU K:77 , HOH K:2036 , HOH K:2248 , HOH K:2249
BINDING SITE FOR RESIDUE EDO K1477
40
EC4
SOFTWARE
VAL K:17 , LYS K:18 , TRP K:66 , THR K:67 , THR K:68 , HOH K:2007 , HOH K:2249
BINDING SITE FOR RESIDUE EDO K1478
41
EC5
SOFTWARE
HOH E:2281 , GLU K:52
BINDING SITE FOR RESIDUE EDO K1479
42
EC6
SOFTWARE
LYS K:466 , GLU K:468 , PHE K:469 , HOH K:2250 , HOH K:2251
BINDING SITE FOR RESIDUE EDO K1480
43
EC7
SOFTWARE
HIS K:298 , PHE K:311 , GLU K:336 , ASP K:473 , HOH K:2161 , HOH K:2180 , HOH K:2252 , HOH K:2253
BINDING SITE FOR RESIDUE EDO K1481
44
EC8
SOFTWARE
LYS M:49 , GLU M:55 , HOH M:2045 , HOH M:2047 , TYR O:226 , HOH O:2132
BINDING SITE FOR RESIDUE EDO M1141
45
EC9
SOFTWARE
GLY M:37 , ILE M:39 , GLY M:82
BINDING SITE FOR RESIDUE EDO M1142
46
FC1
SOFTWARE
THR O:173 , LYS O:175 , LYS O:177 , KCX O:201 , ASP O:203 , GLU O:204 , HIS O:294 , ARG O:295 , HIS O:327 , LYS O:334 , LEU O:335 , SER O:379 , GLY O:380 , GLY O:381 , GLY O:403 , GLY O:404 , MG O:1477 , HOH O:2261 , HOH O:2262 , HOH O:2263 , HOH O:2264 , HOH O:2265 , HOH O:2266 , GLU V:60 , THR V:65 , TRP V:66 , ASN V:123 , HOH V:2080
BINDING SITE FOR RESIDUE CAP O1476
47
FC2
SOFTWARE
THR H:173 , LYS H:175 , LYS H:177 , KCX H:201 , ASP H:203 , GLU H:204 , HIS H:294 , ARG H:295 , HIS H:327 , LYS H:334 , LEU H:335 , SER H:379 , GLY H:380 , GLY H:381 , GLY H:403 , GLY H:404 , MG H:1476 , HOH H:2215 , HOH H:2216 , HOH O:2267 , HOH O:2268 , HOH O:2269 , HOH O:2270 , GLU R:60 , THR R:65 , TRP R:66 , ASN R:123 , HOH R:2037 , HOH R:2075
BINDING SITE FOR RESIDUE CAP O1478
48
FC3
SOFTWARE
TYR O:24 , GLY O:64 , THR O:68 , VAL O:69 , ASP O:72 , LEU O:77 , HOH O:2039 , HOH O:2271 , HOH O:2272
BINDING SITE FOR RESIDUE EDO O1479
49
FC4
SOFTWARE
LYS O:18 , THR O:65 , TRP O:66 , THR O:67 , THR O:68 , HOH O:2272 , HOH O:2273
BINDING SITE FOR RESIDUE EDO O1480
50
FC5
SOFTWARE
GLU O:52 , HOH O:2007 , HOH V:2286
BINDING SITE FOR RESIDUE EDO O1481
51
FC6
SOFTWARE
LYS O:466 , GLU O:468 , PHE O:469 , HOH O:2274 , HOH O:2275
BINDING SITE FOR RESIDUE EDO O1482
52
FC7
SOFTWARE
ARG O:295 , HIS O:298 , PHE O:311 , GLU O:336 , ASP O:473 , HOH O:2276 , HOH O:2277 , HOH O:2278
BINDING SITE FOR RESIDUE EDO O1483
53
FC8
SOFTWARE
LEU O:270 , HOH O:2279 , HOH O:2280 , HOH O:2281 , LEU V:270
BINDING SITE FOR RESIDUE EDO O1484
54
FC9
SOFTWARE
LYS P:49 , GLU P:55 , HOH P:2024 , HOH P:2029 , TYR R:226
BINDING SITE FOR RESIDUE EDO P1141
55
GC1
SOFTWARE
TRP P:38 , ILE P:39 , GLY P:82 , CYS P:83 , HOH P:2059 , HOH P:2060
BINDING SITE FOR RESIDUE EDO P1142
56
GC2
SOFTWARE
GLU H:60 , THR H:65 , TRP H:66 , ASN H:123 , THR R:173 , LYS R:175 , LYS R:177 , KCX R:201 , ASP R:203 , GLU R:204 , HIS R:294 , ARG R:295 , HIS R:327 , LYS R:334 , LEU R:335 , SER R:379 , GLY R:380 , GLY R:381 , GLY R:403 , GLY R:404 , MG R:1477 , HOH R:2106 , HOH R:2246 , HOH R:2247 , HOH R:2248 , HOH R:2249 , HOH R:2250 , HOH R:2251 , HOH R:2252
BINDING SITE FOR RESIDUE CAP R1476
57
GC3
SOFTWARE
GLU E:60 , THR E:65 , TRP E:66 , ASN E:123 , HOH E:2080 , THR K:173 , LYS K:175 , LYS K:177 , KCX K:201 , ASP K:203 , GLU K:204 , HIS K:294 , ARG K:295 , HIS K:327 , LYS K:334 , LEU K:335 , SER K:379 , GLY K:380 , GLY K:381 , GLY K:403 , GLY K:404 , MG K:1476 , HOH K:2094 , HOH K:2203 , HOH R:2253 , HOH R:2254 , HOH R:2255 , HOH R:2256 , HOH R:2257
BINDING SITE FOR RESIDUE CAP R1478
58
GC4
SOFTWARE
TYR R:24 , GLY R:64 , THR R:68 , VAL R:69 , ASP R:72 , LEU R:77 , HOH R:2040 , HOH R:2258 , HOH R:2259
BINDING SITE FOR RESIDUE EDO R1479
59
GC5
SOFTWARE
GLY R:16 , VAL R:17 , LYS R:18 , THR R:65 , TRP R:66 , THR R:67 , THR R:68 , HOH R:2011 , HOH R:2259
BINDING SITE FOR RESIDUE EDO R1480
60
GC6
SOFTWARE
HOH H:2268 , GLU R:52
BINDING SITE FOR RESIDUE EDO R1481
61
GC7
SOFTWARE
LYS R:466 , GLU R:468 , PHE R:469 , HOH R:2260 , HOH R:2261
BINDING SITE FOR RESIDUE EDO R1482
62
GC8
SOFTWARE
TYR A:226 , LYS A:227 , HOH A:2126 , LYS T:49 , GLU T:55 , HOH T:2045
BINDING SITE FOR RESIDUE EDO T1141
63
GC9
SOFTWARE
GLY T:37 , ILE T:39 , PHE T:81 , GLY T:82 , CYS T:83
BINDING SITE FOR RESIDUE EDO T1142
64
HC1
SOFTWARE
GLU O:60 , THR O:65 , TRP O:66 , ASN O:123 , HOH O:2033 , HOH O:2080 , THR V:173 , LYS V:175 , LYS V:177 , KCX V:201 , ASP V:203 , GLU V:204 , HIS V:294 , ARG V:295 , HIS V:327 , LYS V:334 , LEU V:335 , SER V:379 , GLY V:380 , GLY V:381 , GLY V:403 , GLY V:404 , MG V:1477 , HOH V:2277 , HOH V:2278 , HOH V:2279 , HOH V:2280 , HOH V:2281 , HOH V:2282
BINDING SITE FOR RESIDUE CAP V1476
65
HC2
SOFTWARE
TYR V:24 , GLY V:64 , THR V:68 , VAL V:69 , ASP V:72 , EDO V:1479 , HOH V:2283 , HOH V:2284 , HOH V:2285
BINDING SITE FOR RESIDUE EDO V1478
66
HC3
SOFTWARE
VAL V:17 , LYS V:18 , THR V:65 , THR V:67 , THR V:68 , EDO V:1478 , HOH V:2011 , HOH V:2285
BINDING SITE FOR RESIDUE EDO V1479
67
HC4
SOFTWARE
HOH O:2275 , GLU V:52 , ALA V:129
BINDING SITE FOR RESIDUE EDO V1480
68
HC5
SOFTWARE
LYS V:466 , GLU V:468 , PHE V:469 , HOH V:2286 , HOH V:2287
BINDING SITE FOR RESIDUE EDO V1481
69
HC6
SOFTWARE
HIS V:298 , PHE V:311 , GLU V:336 , ASP V:473 , HOH V:2193 , HOH V:2288 , HOH V:2289
BINDING SITE FOR RESIDUE EDO V1482
70
HC7
SOFTWARE
TYR H:226 , LYS H:227 , ALA H:230 , HOH H:2134 , LYS W:49 , GLU W:55 , HOH W:2049
BINDING SITE FOR RESIDUE EDO W1141
71
HC8
SOFTWARE
GLY W:37 , ILE W:39 , GLY W:82 , CYS W:83
BINDING SITE FOR RESIDUE EDO W1142
[
close Site info
]
SAPs(SNPs)/Variants
(1, 8)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_RBL_CHLRE_001 (P46P, chain A/B/E/H/K/O/R/V, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_RBL_CHLRE_001
*
L
46
P
RBL_CHLRE
---
---
A/B/E/H/K/O/R/V
P
46
P
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 8)
Info
All PROSITE Patterns/Profiles
1: RUBISCO_LARGE (A:196-204,B:196-204,E:196-204,H:19...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RUBISCO_LARGE
PS00157
Ribulose bisphosphate carboxylase large chain active site.
RBL_CHLRE
196-204
8
A:196-204
B:196-204
E:196-204
H:196-204
K:196-204
O:196-204
R:196-204
V:196-204
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 24)
Info
All SCOP Domains
1a: SCOP_d1uw9a2 (A:11-149)
1b: SCOP_d1uw9b2 (B:9-149)
1c: SCOP_d1uw9e2 (E:11-149)
1d: SCOP_d1uw9h2 (H:7-149)
1e: SCOP_d1uw9k2 (K:7-149)
1f: SCOP_d1uw9o2 (O:7-149)
1g: SCOP_d1uw9r2 (R:11-149)
1h: SCOP_d1uw9v2 (V:10-149)
2a: SCOP_d1uw9c_ (C:)
2b: SCOP_d1uw9f_ (F:)
2c: SCOP_d1uw9i_ (I:)
2d: SCOP_d1uw9j_ (J:)
2e: SCOP_d1uw9m_ (M:)
2f: SCOP_d1uw9p_ (P:)
2g: SCOP_d1uw9t_ (T:)
2h: SCOP_d1uw9w_ (W:)
3a: SCOP_d1uw9a1 (A:150-475)
3b: SCOP_d1uw9b1 (B:150-475)
3c: SCOP_d1uw9e1 (E:150-475)
3d: SCOP_d1uw9h1 (H:150-475)
3e: SCOP_d1uw9k1 (K:150-475)
3f: SCOP_d1uw9o1 (O:150-475)
3g: SCOP_d1uw9r1 (R:150-475)
3h: SCOP_d1uw9v1 (V:150-475)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
RuBisCO, large subunit, small (N-terminal) domain
(66)
Family
:
automated matches
(27)
Protein domain
:
automated matches
(27)
Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]
(9)
1a
d1uw9a2
A:11-149
1b
d1uw9b2
B:9-149
1c
d1uw9e2
E:11-149
1d
d1uw9h2
H:7-149
1e
d1uw9k2
K:7-149
1f
d1uw9o2
O:7-149
1g
d1uw9r2
R:11-149
1h
d1uw9v2
V:10-149
Fold
:
RuBisCO, small subunit
(44)
Superfamily
:
RuBisCO, small subunit
(44)
Family
:
RuBisCO, small subunit
(44)
Protein domain
:
automated matches
(16)
Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]
(7)
2a
d1uw9c_
C:
2b
d1uw9f_
F:
2c
d1uw9i_
I:
2d
d1uw9j_
J:
2e
d1uw9m_
M:
2f
d1uw9p_
P:
2g
d1uw9t_
T:
2h
d1uw9w_
W:
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
RuBisCo, C-terminal domain
(66)
Family
:
RuBisCo, large subunit, C-terminal domain
(56)
Protein domain
:
automated matches
(16)
Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]
(9)
3a
d1uw9a1
A:150-475
3b
d1uw9b1
B:150-475
3c
d1uw9e1
E:150-475
3d
d1uw9h1
H:150-475
3e
d1uw9k1
K:150-475
3f
d1uw9o1
O:150-475
3g
d1uw9r1
R:150-475
3h
d1uw9v1
V:150-475
[
close SCOP info
]
CATH Domains
(3, 24)
Info
all CATH domains
1a: CATH_1uw9A01 (A:22-148)
1b: CATH_1uw9R01 (R:22-148)
1c: CATH_1uw9V01 (V:22-148)
1d: CATH_1uw9B01 (B:22-148)
1e: CATH_1uw9E01 (E:22-148)
1f: CATH_1uw9H01 (H:22-148)
1g: CATH_1uw9K01 (K:22-148)
1h: CATH_1uw9O01 (O:22-148)
2a: CATH_1uw9C00 (C:1-140)
2b: CATH_1uw9T00 (T:1-140)
2c: CATH_1uw9W00 (W:1-140)
2d: CATH_1uw9F00 (F:1-140)
2e: CATH_1uw9I00 (I:1-140)
2f: CATH_1uw9J00 (J:1-140)
2g: CATH_1uw9M00 (M:1-140)
2h: CATH_1uw9P00 (P:1-140)
3a: CATH_1uw9A02 (A:149-462)
3b: CATH_1uw9R02 (R:149-462)
3c: CATH_1uw9V02 (V:149-462)
3d: CATH_1uw9B02 (B:149-462)
3e: CATH_1uw9E02 (E:149-462)
3f: CATH_1uw9H02 (H:149-462)
3g: CATH_1uw9K02 (K:149-462)
3h: CATH_1uw9O02 (O:149-462)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.150, no name defined]
(49)
Chlamydomonas reinhardtii. Organism_taxid: 3055.
(5)
1a
1uw9A01
A:22-148
1b
1uw9R01
R:22-148
1c
1uw9V01
V:22-148
1d
1uw9B01
B:22-148
1e
1uw9E01
E:22-148
1f
1uw9H01
H:22-148
1g
1uw9K01
K:22-148
1h
1uw9O01
O:22-148
Topology
:
Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase
(42)
Homologous Superfamily
:
[code=3.30.190.10, no name defined]
(35)
Chlamydomonas reinhardtii. Organism_taxid: 3055.
(5)
2a
1uw9C00
C:1-140
2b
1uw9T00
T:1-140
2c
1uw9W00
W:1-140
2d
1uw9F00
F:1-140
2e
1uw9I00
I:1-140
2f
1uw9J00
J:1-140
2g
1uw9M00
M:1-140
2h
1uw9P00
P:1-140
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Rubisco
(49)
Chlamydomonas reinhardtii. Organism_taxid: 3055.
(5)
3a
1uw9A02
A:149-462
3b
1uw9R02
R:149-462
3c
1uw9V02
V:149-462
3d
1uw9B02
B:149-462
3e
1uw9E02
E:149-462
3f
1uw9H02
H:149-462
3g
1uw9K02
K:149-462
3h
1uw9O02
O:149-462
[
close CATH info
]
Pfam Domains
(3, 24)
Info
all PFAM domains
1a: PFAM_RuBisCO_large_1uw9V01 (V:154-462)
1b: PFAM_RuBisCO_large_1uw9V02 (V:154-462)
1c: PFAM_RuBisCO_large_1uw9V03 (V:154-462)
1d: PFAM_RuBisCO_large_1uw9V04 (V:154-462)
1e: PFAM_RuBisCO_large_1uw9V05 (V:154-462)
1f: PFAM_RuBisCO_large_1uw9V06 (V:154-462)
1g: PFAM_RuBisCO_large_1uw9V07 (V:154-462)
1h: PFAM_RuBisCO_large_1uw9V08 (V:154-462)
2a: PFAM_RuBisCO_large_N_1uw9V09 (V:21-146)
2b: PFAM_RuBisCO_large_N_1uw9V10 (V:21-146)
2c: PFAM_RuBisCO_large_N_1uw9V11 (V:21-146)
2d: PFAM_RuBisCO_large_N_1uw9V12 (V:21-146)
2e: PFAM_RuBisCO_large_N_1uw9V13 (V:21-146)
2f: PFAM_RuBisCO_large_N_1uw9V14 (V:21-146)
2g: PFAM_RuBisCO_large_N_1uw9V15 (V:21-146)
2h: PFAM_RuBisCO_large_N_1uw9V16 (V:21-146)
3a: PFAM_RuBisCO_small_1uw9W01 (W:11-127)
3b: PFAM_RuBisCO_small_1uw9W02 (W:11-127)
3c: PFAM_RuBisCO_small_1uw9W03 (W:11-127)
3d: PFAM_RuBisCO_small_1uw9W04 (W:11-127)
3e: PFAM_RuBisCO_small_1uw9W05 (W:11-127)
3f: PFAM_RuBisCO_small_1uw9W06 (W:11-127)
3g: PFAM_RuBisCO_small_1uw9W07 (W:11-127)
3h: PFAM_RuBisCO_small_1uw9W08 (W:11-127)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: RuBisCO_large]
(36)
Family
:
RuBisCO_large
(36)
Chlamydomonas reinhardtii (Chlamydomonas smithii)
(10)
1a
RuBisCO_large-1uw9V01
V:154-462
1b
RuBisCO_large-1uw9V02
V:154-462
1c
RuBisCO_large-1uw9V03
V:154-462
1d
RuBisCO_large-1uw9V04
V:154-462
1e
RuBisCO_large-1uw9V05
V:154-462
1f
RuBisCO_large-1uw9V06
V:154-462
1g
RuBisCO_large-1uw9V07
V:154-462
1h
RuBisCO_large-1uw9V08
V:154-462
Clan
:
no clan defined [family: RuBisCO_large_N]
(27)
Family
:
RuBisCO_large_N
(27)
Chlamydomonas reinhardtii (Chlamydomonas smithii)
(10)
2a
RuBisCO_large_N-1uw9V09
V:21-146
2b
RuBisCO_large_N-1uw9V10
V:21-146
2c
RuBisCO_large_N-1uw9V11
V:21-146
2d
RuBisCO_large_N-1uw9V12
V:21-146
2e
RuBisCO_large_N-1uw9V13
V:21-146
2f
RuBisCO_large_N-1uw9V14
V:21-146
2g
RuBisCO_large_N-1uw9V15
V:21-146
2h
RuBisCO_large_N-1uw9V16
V:21-146
Clan
:
no clan defined [family: RuBisCO_small]
(23)
Family
:
RuBisCO_small
(23)
Chlamydomonas reinhardtii (Chlamydomonas smithii)
(10)
3a
RuBisCO_small-1uw9W01
W:11-127
3b
RuBisCO_small-1uw9W02
W:11-127
3c
RuBisCO_small-1uw9W03
W:11-127
3d
RuBisCO_small-1uw9W04
W:11-127
3e
RuBisCO_small-1uw9W05
W:11-127
3f
RuBisCO_small-1uw9W06
W:11-127
3g
RuBisCO_small-1uw9W07
W:11-127
3h
RuBisCO_small-1uw9W08
W:11-127
[
close Pfam info
]
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