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1UW3
Biol. Unit 1
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Asym.Unit (25 KB)
Biol.Unit 1 (40 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF THE GLOBULAR DOMAIN OF SHEEP PRION PROTEIN
Authors
:
L. F. Haire, S. M. Whyte, N. Vasisht, A. C. Gill, C. Verma, E. J. Dodson, G. G. Dodson, P. M. Bayley
Date
:
29 Jan 04 (Deposition) - 25 Mar 04 (Release) - 07 Dec 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.04
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Transmissible Spongiform Encephalopathy, Creutzfeld Jacob Disease, Membrane Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. F. Haire, S. M. Whyte, N. Vasisht, A. C. Gill, C. Verma, E. J. Dodson, G. G. Dodson, P. M. Bayley
The Crystal Structure Of The Globular Domain Of Sheep Prion Protein
J. Mol. Biol. V. 336 1175 2004
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: GLUTATHIONE (GSHa)
2a: PHOSPHATE ION (PO4a)
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Label:
No.
Name
Count
Type
Full Name
1
GSH
2
Ligand/Ion
GLUTATHIONE
2
PO4
2
Ligand/Ion
PHOSPHATE ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE A:141 , GLY A:142 , ASN A:143 , GLU A:146 , LYS A:204 , ARG A:208
BINDING SITE FOR RESIDUE PO4 A1232
2
AC2
SOFTWARE
ARG A:136 , PRO A:137 , LEU A:138 , TYR A:145 , CYS A:148 , TYR A:149 , TYR A:150 , MET A:154 , HOH A:2015 , HOH A:2017
BINDING SITE FOR RESIDUE GSH A1231
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SAPs(SNPs)/Variants
(7, 14)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_PRIO_SHEEP_002 (A133V, chain A, )
2: VAR_PRIO_SHEEP_003 (M134T, chain A, )
3: VAR_PRIO_SHEEP_004 (L138F, chain A, )
4: VAR_PRIO_SHEEP_005 (R151H, chain A, )
5: VAR_PRIO_SHEEP_006 (Q168H, chain A, )
6: VAR_PRIO_SHEEP_007 (Q168Q, chain A, )
7: VAR_PRIO_SHEEP_008 (R208Q, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_PRIO_SHEEP_002
*
A
136
V
PRIO_SHEEP
---
---
A
A
133
V
2
UniProt
VAR_PRIO_SHEEP_003
*
M
137
T
PRIO_SHEEP
---
---
A
M
134
T
3
UniProt
VAR_PRIO_SHEEP_004
*
L
141
F
PRIO_SHEEP
---
---
A
L
138
F
4
UniProt
VAR_PRIO_SHEEP_005
*
R
154
H
PRIO_SHEEP
---
---
A
R
151
H
5
UniProt
VAR_PRIO_SHEEP_006
*
R
171
H
PRIO_SHEEP
---
---
A
Q
168
H
6
UniProt
VAR_PRIO_SHEEP_007
*
R
171
Q
PRIO_SHEEP
---
---
A
Q
168
Q
7
UniProt
VAR_PRIO_SHEEP_008
*
R
211
Q
PRIO_SHEEP
---
---
A
R
208
Q
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: PRION_2 (A:200-218)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PRION_2
PS00706
Prion protein signature 2.
PRIO_SHEEP
203-221
2
A:200-218
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1uw3a_ (A:)
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(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Prion-like
(73)
Superfamily
:
Prion-like
(73)
Family
:
Prion-like
(73)
Protein domain
:
Prion protein domain
(42)
Sheep (Ovis aries) [TaxId: 9940]
(6)
1a
d1uw3a_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1uw3A00 (A:125-230)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Major Prion Protein
(62)
Homologous Superfamily
:
Major Prion Protein
(62)
Sheep (Ovis aries)
(6)
1a
1uw3A00
A:125-230
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Chain A
Asymmetric Unit 1
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