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1UVH
Biol. Unit 1
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Asym.Unit (107 KB)
Biol.Unit 1 (298 KB)
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(1)
Title
:
X-RAY STRUCTURE OF DPS FROM MYCOBACTERIUM SMEGMATIS
Authors
:
A. Ilari, P. Ceci, E. Falvo, E. Chiancone
Date
:
20 Jan 04 (Deposition) - 09 Feb 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (3x)
Keywords
:
Dna Protection From Oxidative Damage, Dna Binding Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
P. Ceci, A. Ilari, E. Falvo, L. Giangiacomo, E. Chiancone
Reassessment Of Protein Stability, Dna Binding, And Protection Of Mycobacterium Smegmatis Dps.
J. Biol. Chem. V. 280 34776 2005
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: FE (III) ION (FEa)
1b: FE (III) ION (FEb)
1c: FE (III) ION (FEc)
1d: FE (III) ION (FEd)
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:66 , GLU A:70 , HIS B:39
BINDING SITE FOR RESIDUE FE A1162
2
AC2
SOFTWARE
HIS A:39 , ASP B:66 , GLU B:70
BINDING SITE FOR RESIDUE FE B1162
3
AC3
SOFTWARE
ASP C:66 , GLU C:70 , HIS D:39
BINDING SITE FOR RESIDUE FE C1162
4
AC4
SOFTWARE
HIS C:39 , ASP D:66 , GLU D:70
BINDING SITE FOR RESIDUE FE D1162
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 24)
Info
All PROSITE Patterns/Profiles
1: DPS_1 (A:39-55,B:39-55,C:39-55,D:39-55)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DPS_1
PS00818
Dps protein family signature 1.
DPS_MYCS2
39-55
12
A:39-55
B:39-55
C:39-55
D:39-55
DPS_MYCSM
39-55
12
A:39-55
B:39-55
C:39-55
D:39-55
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1uvha_ (A:)
1b: SCOP_d1uvhb_ (B:)
1c: SCOP_d1uvhc_ (C:)
1d: SCOP_d1uvhd_ (D:)
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Protein Domains
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Class
:
All alpha proteins
(14657)
Fold
:
Ferritin-like
(533)
Superfamily
:
Ferritin-like
(489)
Family
:
Ferritin
(232)
Protein domain
:
automated matches
(70)
Mycobacterium smegmatis [TaxId: 1772]
(1)
1a
d1uvha_
A:
1b
d1uvhb_
B:
1c
d1uvhc_
C:
1d
d1uvhd_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1uvhA00 (A:5-161)
1b: CATH_1uvhB00 (B:5-161)
1c: CATH_1uvhC00 (C:5-161)
1d: CATH_1uvhD00 (D:5-161)
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Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Ferritin;
(180)
Homologous Superfamily
:
[code=1.20.1260.10, no name defined]
(180)
Mycobacterium smegmatis. Organism_taxid: 1772.
(5)
1a
1uvhA00
A:5-161
1b
1uvhB00
B:5-161
1c
1uvhC00
C:5-161
1d
1uvhD00
D:5-161
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Ferritin_1uvhD01 (D:18-160)
1b: PFAM_Ferritin_1uvhD02 (D:18-160)
1c: PFAM_Ferritin_1uvhD03 (D:18-160)
1d: PFAM_Ferritin_1uvhD04 (D:18-160)
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Clan
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Ferritin
(185)
Family
:
Ferritin
(83)
Mycobacterium smegmatis
(6)
1a
Ferritin-1uvhD01
D:18-160
1b
Ferritin-1uvhD02
D:18-160
1c
Ferritin-1uvhD03
D:18-160
1d
Ferritin-1uvhD04
D:18-160
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Asym.Unit (107 KB)
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