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1UUT
Asym. Unit
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Asym.Unit (91 KB)
Biol.Unit 1 (45 KB)
Biol.Unit 2 (45 KB)
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(1)
Title
:
THE NUCLEASE DOMAIN OF ADENO-ASSOCIATED VIRUS REP COMPLEXED WITH THE RBE' STEMLOOP OF THE VIRAL INVERTED TERMINAL REPEAT
Authors
:
F. Dyda, A. B. Hickman, D. R. Ronning, Z. N. Perez, R. M. Kotin
Date
:
10 Jan 04 (Deposition) - 19 Feb 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Hydrolase/Dna, Nuclease/Complex, Viral Protein, Nuclease, Replication, Protein-Dna, Stemloop, Helicase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
A. B. Hickman, D. R. Ronning, Z. N. Perez, R. M. Kotin, F. Dyda
The Nuclease Domain Of Adeno-Associated Virus Rep Coordinates Replication Initiation Using Two Distinct Dna Recognition Interfaces
Mol. Cell V. 13 403 2004
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Hetero Components
(2, 5)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
MG
4
Ligand/Ion
MAGNESIUM ION
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:82 , HIS A:89 , HIS A:91 , HOH A:2110 , HOH A:2116 , HOH A:2117
BINDING SITE FOR RESIDUE MG A1196
2
AC2
SOFTWARE
HOH A:2038 , HOH A:2039 , HOH B:2014 , HOH B:2042 , HOH B:2043
BINDING SITE FOR RESIDUE MG A1197
3
AC3
SOFTWARE
GLY A:84 , SER A:85 , GLU A:86 , TYR A:87
BINDING SITE FOR RESIDUE CL A1198
4
AC4
SOFTWARE
GLU B:82 , HIS B:89 , HIS B:91 , HOH B:2096 , HOH B:2101 , HOH B:2102
BINDING SITE FOR RESIDUE MG B1196
5
AC5
SOFTWARE
DT C:9 , HOH C:2005 , HOH C:2016 , HOH C:2017 , HOH C:2018
BINDING SITE FOR RESIDUE MG C1016
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1uuta_ (A:)
1b: SCOP_d1uutb_ (B:)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Origin of replication-binding domain, RBD-like
(33)
Superfamily
:
Origin of replication-binding domain, RBD-like
(33)
Family
:
Replication protein Rep, nuclease domain
(3)
Protein domain
:
Replication protein Rep, nuclease domain
(3)
Adeno-associated virus, aav-5 [TaxId: 272636]
(3)
1a
d1uuta_
A:
1b
d1uutb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1uutA00 (A:1-195)
1b: CATH_1uutB00 (B:1-195)
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Organisms
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)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Replication Protein E1; Chain: A,
(19)
Homologous Superfamily
:
[code=3.40.1310.20, no name defined]
(15)
Adeno-associated virus 5. Organism_taxid: 82300. Strain: serotype 5.
(1)
1a
1uutA00
A:1-195
1b
1uutB00
B:1-195
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Rep_N_1uutB01 (B:4-189)
1b: PFAM_Rep_N_1uutB02 (B:4-189)
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Clan
:
no clan defined [family: Rep_N]
(3)
Family
:
Rep_N
(3)
Adeno-associated virus - 5
(3)
1a
Rep_N-1uutB01
B:4-189
1b
Rep_N-1uutB02
B:4-189
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Show PDB file:
Asym.Unit (91 KB)
Header - Asym.Unit
Biol.Unit 1 (45 KB)
Header - Biol.Unit 1
Biol.Unit 2 (45 KB)
Header - Biol.Unit 2
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