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1UTZ
Asym. Unit
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Asym.Unit (64 KB)
Biol.Unit 1 (165 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MMP-12 COMPLEXED TO (2R)-3-({[4-[(PYRI DIN-4-YL)PHENYL]-THIEN-2-YL}CARBOXAMIDO)(PHENYL)PROPANOIC ACID
Authors
:
R. Morales, S. Perrier, J. M. Florent, J. Beltra, S. Dufour, I. De Mendez, P. Manceau, A. Tertre, F. Moreau, D. Compere, A. C. Dublanchet, M. O'Gara
Date
:
12 Dec 03 (Deposition) - 15 Dec 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (3x)
Keywords
:
Macrophage Metalloelastase, Non-Zinc Chelator, Mmp-12, Mmp Inhibitor, Hydrolase, Metalloprotease
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Morales, S. Perrier, J. M. Florent, J. Beltra, S. Dufour, I. De Mendez, P. Manceau, A. Tertre, F. Moreau, D. Compere, A. C. Dublanchet, M. O'Gara
Crystal Structures Of Novel Non-Peptidic, Non-Zinc Chelating Inhibitors Bound To Mmp-12
J. Mol. Biol. V. 341 1063 2004
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Hetero Components
(4, 13)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: ACETOHYDROXAMIC ACID (HAEa)
2b: ACETOHYDROXAMIC ACID (HAEb)
3a: (2R)-3-({[4-[(PYRIDIN-4-YL)PHENYL]... (PF3a)
3b: (2R)-3-({[4-[(PYRIDIN-4-YL)PHENYL]... (PF3b)
3c: (2R)-3-({[4-[(PYRIDIN-4-YL)PHENYL]... (PF3c)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
4
Ligand/Ion
CALCIUM ION
2
HAE
2
Ligand/Ion
ACETOHYDROXAMIC ACID
3
PF3
3
Ligand/Ion
(2R)-3-({[4-[(PYRIDIN-4-YL)PHENYL]-THIEN-2-YL}CARBOXAMIDO)(PHENYL)PROPANOIC ACID
4
ZN
4
Ligand/Ion
ZINC ION
[
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:218 , HIS A:222 , HIS A:228 , HAE A:1267
BINDING SITE FOR RESIDUE ZN A1268
02
AC2
SOFTWARE
HIS A:168 , ASP A:170 , HIS A:183 , HIS A:196
BINDING SITE FOR RESIDUE ZN A1269
03
AC3
SOFTWARE
ASP A:175 , GLY A:176 , GLY A:178 , ILE A:180 , ASP A:198 , GLU A:201
BINDING SITE FOR RESIDUE CA A1270
04
AC4
SOFTWARE
ASP A:124 , GLU A:199 , GLU A:201
BINDING SITE FOR RESIDUE CA A1271
05
AC5
SOFTWARE
HIS B:218 , HIS B:222 , HIS B:228 , HAE B:1266
BINDING SITE FOR RESIDUE ZN B1267
06
AC6
SOFTWARE
HIS B:168 , ASP B:170 , HIS B:183 , HIS B:196
BINDING SITE FOR RESIDUE ZN B1268
07
AC7
SOFTWARE
ASP B:175 , GLY B:176 , GLY B:178 , ILE B:180 , ASP B:198 , GLU B:201
BINDING SITE FOR RESIDUE CA B1269
08
AC8
SOFTWARE
ASP B:124 , GLU B:199 , GLU B:201
BINDING SITE FOR RESIDUE CA B1270
09
AC9
SOFTWARE
GLY A:179 , ILE A:180 , LEU A:181 , ALA A:182 , HIS A:218 , GLU A:219 , ALA A:234 , VAL A:235 , PHE A:237 , PRO A:238 , THR A:239 , TYR A:240 , LYS A:241 , PF3 A:1266 , HAE A:1267 , HOH A:2069 , HOH A:2070 , SER B:229 , PRO B:238
BINDING SITE FOR RESIDUE PF3 A1265
10
BC1
SOFTWARE
SER A:230 , PHE A:237 , PRO A:238 , THR A:239 , PF3 A:1265 , ASP B:175 , LYS B:177 , GLY B:178 , GLY B:179 , PHE B:202 , HIS B:206 , GLY B:208 , GLY B:209 , PRO B:238 , PF3 B:1265
BINDING SITE FOR RESIDUE PF3 A1266
11
BC2
SOFTWARE
ALA A:182 , HIS A:183 , HIS A:218 , GLU A:219 , HIS A:222 , HIS A:228 , PF3 A:1265 , ZN A:1268 , HOH A:2071 , HOH A:2072
BINDING SITE FOR RESIDUE HAE A1267
12
BC3
SOFTWARE
HIS A:228 , SER A:229 , PF3 A:1266 , GLY B:179 , ILE B:180 , LEU B:181 , ALA B:182 , LEU B:214 , HIS B:218 , GLU B:219 , ALA B:234 , VAL B:235 , PHE B:237 , PRO B:238 , THR B:239 , TYR B:240 , LYS B:241 , HAE B:1266 , HOH B:2046 , HOH B:2057 , HOH B:2058 , HOH B:2059
BINDING SITE FOR RESIDUE PF3 B1265
13
BC4
SOFTWARE
ALA B:182 , HIS B:183 , HIS B:218 , GLU B:219 , HIS B:222 , HIS B:228 , PF3 B:1265 , ZN B:1267 , HOH B:2059
BINDING SITE FOR RESIDUE HAE B1266
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: ZINC_PROTEASE (A:215-224,B:215-224)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZINC_PROTEASE
PS00142
Neutral zinc metallopeptidases, zinc-binding region signature.
MMP12_HUMAN
215-224
2
A:215-224
B:215-224
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1utza_ (A:)
1b: SCOP_d1utzb_ (B:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Zincin-like
(701)
Superfamily
:
Metalloproteases (zincins), catalytic domain
(647)
Family
:
Matrix metalloproteases, catalytic domain
(199)
Protein domain
:
Macrophage elastase (MMP-12)
(34)
Human (Homo sapiens) [TaxId: 9606]
(34)
1a
d1utza_
A:
1b
d1utzb_
B:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1utzA00 (A:106-264)
1b: CATH_1utzB00 (B:106-264)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Collagenase (Catalytic Domain)
(236)
Homologous Superfamily
:
Collagenase (Catalytic Domain)
(234)
Human (Homo sapiens)
(153)
1a
1utzA00
A:106-264
1b
1utzB00
B:106-264
[
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]
Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Peptidase_M10_1utzB01 (B:108-263)
1b: PFAM_Peptidase_M10_1utzB02 (B:108-263)
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Clans
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(
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Families
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(
)
Organisms
(
)
(
)
Clan
:
Peptidase_MA
(251)
Family
:
Peptidase_M10
(85)
Homo sapiens (Human)
(82)
1a
Peptidase_M10-1utzB01
B:108-263
1b
Peptidase_M10-1utzB02
B:108-263
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Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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