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1UTH
Asym. Unit
Info
Asym.Unit (84 KB)
Biol.Unit 1 (77 KB)
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(1)
Title
:
DNTR FROM BURKHOLDERIA SP. STRAIN DNT IN COMPLEX WITH THIOCYANATE
Authors
:
I. A. Smirnova, C. Dian, G. A. Leonard, S. Mcsweeney, D. Birse, P. Brzezinski
Date
:
09 Dec 03 (Deposition) - 01 Jul 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Transcription Regulation, Lysr, Transcriptional Regulator
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. A. Smirnova, C. Dian, G. A. Leonard, S. Mcsweeney, D. Birse, P. Brzezinski
Development Of A Bacterial Biosensor For Nitrotoluenes: The Crystal Structure Of The Transcriptional Regulator Dntr
J. Mol. Biol. V. 340 405 2004
[
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Hetero Components
(1, 17)
Info
All Hetero Components
1a: THIOCYANATE ION (SCNa)
1b: THIOCYANATE ION (SCNb)
1c: THIOCYANATE ION (SCNc)
1d: THIOCYANATE ION (SCNd)
1e: THIOCYANATE ION (SCNe)
1f: THIOCYANATE ION (SCNf)
1g: THIOCYANATE ION (SCNg)
1h: THIOCYANATE ION (SCNh)
1i: THIOCYANATE ION (SCNi)
1j: THIOCYANATE ION (SCNj)
1k: THIOCYANATE ION (SCNk)
1l: THIOCYANATE ION (SCNl)
1m: THIOCYANATE ION (SCNm)
1n: THIOCYANATE ION (SCNn)
1o: THIOCYANATE ION (SCNo)
1p: THIOCYANATE ION (SCNp)
1q: THIOCYANATE ION (SCNq)
View:
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Label:
No.
Name
Count
Type
Full Name
1
SCN
17
Ligand/Ion
THIOCYANATE ION
[
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Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:107 , ILE A:273 , SCN A:1310 , HOH A:2033 , HOH A:2043
BINDING SITE FOR RESIDUE SCN A1305
02
AC2
SOFTWARE
ARG A:220 , HOH A:2102
BINDING SITE FOR RESIDUE SCN A1306
03
AC3
SOFTWARE
MET A:109 , PHE A:229 , ILE A:230 , GLY A:233 , PHE A:249 , ILE B:230
BINDING SITE FOR RESIDUE SCN A1307
04
AC4
SOFTWARE
ASP A:105 , ASN A:134
BINDING SITE FOR RESIDUE SCN A1308
05
AC5
SOFTWARE
ALA A:216
BINDING SITE FOR RESIDUE SCN A1309
06
AC6
SOFTWARE
THR A:104 , LEU A:153 , GLY A:205 , SCN A:1305 , HOH A:2034
BINDING SITE FOR RESIDUE SCN A1310
07
AC7
SOFTWARE
ARG A:165 , HOH A:2039 , HOH A:2041 , PHE B:93 , ARG B:122 , TRP B:289
BINDING SITE FOR RESIDUE SCN A1311
08
AC8
SOFTWARE
ARG A:164 , TRP A:277 , ARG A:291 , GLN A:292
BINDING SITE FOR RESIDUE SCN A1312
09
AC9
SOFTWARE
GLN A:163 , PHE B:90
BINDING SITE FOR RESIDUE SCN A1313
10
BC1
SOFTWARE
ARG A:168 , GLU A:300 , HOH A:2103
BINDING SITE FOR RESIDUE SCN A1314
11
BC2
SOFTWARE
GLY A:160 , GLN B:292 , SCN B:1306
BINDING SITE FOR RESIDUE SCN A1315
12
BC3
SOFTWARE
GLY B:107 , HIS B:169 , HOH B:2023 , HOH B:2062
BINDING SITE FOR RESIDUE SCN B1302
13
BC4
SOFTWARE
ARG B:220 , HOH B:2063
BINDING SITE FOR RESIDUE SCN B1303
14
BC5
SOFTWARE
ARG B:132 , GLY B:134
BINDING SITE FOR RESIDUE SCN B1304
15
BC6
SOFTWARE
LEU B:153 , LEU B:154
BINDING SITE FOR RESIDUE SCN B1305
16
BC7
SOFTWARE
SCN A:1315 , TRP B:277 , ARG B:291 , GLN B:292
BINDING SITE FOR RESIDUE SCN B1306
17
BC8
SOFTWARE
ARG A:223 , ALA B:120 , ALA B:123 , PRO B:124 , ILE B:126 , HOH B:2064
BINDING SITE FOR RESIDUE SCN B1307
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1utha_ (A:)
1b: SCOP_d1uthb_ (B:)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Periplasmic binding protein-like II
(813)
Superfamily
:
Periplasmic binding protein-like II
(813)
Family
:
Phosphate binding protein-like
(463)
Protein domain
:
LysR-type regulatory protein DntR
(2)
Burkholderia sp. [TaxId: 36773]
(2)
1a
d1utha_
A:
1b
d1uthb_
B:
[
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1uthB01 (B:76-170,B:270-301)
1b: CATH_1uthA01 (A:86-170,A:270-304)
1c: CATH_1uthA02 (A:171-269)
1d: CATH_1uthB02 (B:171-269)
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Organisms
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)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
D-Maltodextrin-Binding Protein; domain 2
(600)
Homologous Superfamily
:
Periplasmic binding protein-like II
(486)
Burkholderia sp.. Organism_taxid: 233098. Strain: dnt.
(2)
1a
1uthB01
B:76-170,B:270-301
1b
1uthA01
A:86-170,A:270-304
1c
1uthA02
A:171-269
1d
1uthB02
B:171-269
[
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_LysR_substrate_1uthB01 (B:94-299)
1b: PFAM_LysR_substrate_1uthB02 (B:94-299)
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Clan
:
PBP
(391)
Family
:
LysR_substrate
(13)
Burkholderia sp. DNT
(2)
1a
LysR_substrate-1uthB01
B:94-299
1b
LysR_substrate-1uthB02
B:94-299
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Asym.Unit (84 KB)
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