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1UTB
Biol. Unit 1
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Asym.Unit (81 KB)
Biol.Unit 1 (146 KB)
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(1)
Title
:
DNTR FROM BURKHOLDERIA SP. STRAIN DNT
Authors
:
I. A. Smirnova, C. Dian, G. A. Leonard, S. Mcsweeney, D. Birse, P. Brzezinski
Date
:
05 Dec 03 (Deposition) - 01 Jul 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.59
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Transcription Regulation, Lysr, Transcriptional Regulator
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
I. A. Smirnova, C. Dian, G. A. Leonard, S. Mcsweeney, D. Birse, P. Brzezinski
Development Of A Bacterial Biosensor For Nitrotoluenes: The Crystal Structure Of The Transcriptional Regulator Dntr
J. Mol. Biol. V. 340 405 2004
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Hetero Components
(2, 14)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
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Label:
No.
Name
Count
Type
Full Name
1
ACT
4
Ligand/Ion
ACETATE ION
2
GOL
10
Ligand/Ion
GLYCEROL
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:104 , ILE A:106 , HIS A:169 , HIS A:206 , ILE A:273
BINDING SITE FOR RESIDUE ACT A1305
2
AC2
SOFTWARE
THR B:104 , ILE B:106 , GLY B:107 , HIS B:169 , HIS B:206 , ILE B:273 , HOH B:2054
BINDING SITE FOR RESIDUE ACT B1305
3
AC3
SOFTWARE
ASP A:105 , ARG A:132 , HIS A:228 , HOH A:2056 , HOH A:2057 , HOH A:2058 , ASP B:105 , ARG B:132 , HIS B:228
BINDING SITE FOR RESIDUE GOL A1303
4
AC4
SOFTWARE
GLU A:195 , ARG A:223 , THR A:239 , ASP A:240 , LEU A:241 , HOH A:2059 , MET B:116 , ALA B:120
BINDING SITE FOR RESIDUE GOL A1304
5
AC5
SOFTWARE
MET A:109 , ILE A:230 , PHE A:257 , HOH A:2044 , MET B:109 , PHE B:229 , ILE B:230 , ILE B:232 , GLY B:233 , PHE B:249 , PHE B:257
BINDING SITE FOR RESIDUE GOL B1302
6
AC6
SOFTWARE
MET A:116 , ALA A:120 , GLU B:195 , ARG B:223 , THR B:239 , ASP B:240
BINDING SITE FOR RESIDUE GOL B1303
7
AC7
SOFTWARE
TYR B:171 , VAL B:199 , HIS B:206 , VAL B:209 , PHE B:229 , THR B:244 , VAL B:245 , PRO B:246 , HOH B:2031 , HOH B:2053
BINDING SITE FOR RESIDUE GOL B1304
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1utba_ (A:)
1b: SCOP_d1utbb_ (B:)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Periplasmic binding protein-like II
(813)
Superfamily
:
Periplasmic binding protein-like II
(813)
Family
:
Phosphate binding protein-like
(463)
Protein domain
:
LysR-type regulatory protein DntR
(2)
Burkholderia sp. [TaxId: 36773]
(2)
1a
d1utba_
A:
1b
d1utbb_
B:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1utbA01 (A:89-170,A:270-302)
1b: CATH_1utbB01 (B:75-170,B:270-301)
1c: CATH_1utbA02 (A:171-269)
1d: CATH_1utbB02 (B:171-269)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
D-Maltodextrin-Binding Protein; domain 2
(600)
Homologous Superfamily
:
Periplasmic binding protein-like II
(486)
Burkholderia sp.. Organism_taxid: 233098. Strain: dnt.
(2)
1a
1utbA01
A:89-170,A:270-302
1b
1utbB01
B:75-170,B:270-301
1c
1utbA02
A:171-269
1d
1utbB02
B:171-269
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_LysR_substrate_1utbB01 (B:94-299)
1b: PFAM_LysR_substrate_1utbB02 (B:94-299)
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Clan
:
PBP
(391)
Family
:
LysR_substrate
(13)
Burkholderia sp. DNT
(2)
1a
LysR_substrate-1utbB01
B:94-299
1b
LysR_substrate-1utbB02
B:94-299
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Asym.Unit (81 KB)
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