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1USX
Biol. Unit 1
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Asym.Unit (218 KB)
Biol.Unit 1 (281 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE NEWCASTLE DISEASE VIRUS HEMAGGLUTININ-NEURAMINIDASE COMPLEXED WITH THIOSIALOSIDE
Authors
:
V. Zaitsev, M. Von Itzstein, D. Groves, M. Kiefel, T. Takimoto, A. Portner, G. Taylor
Date
:
01 Dec 03 (Deposition) - 19 Mar 04 (Release) - 20 Nov 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (2x)
Keywords
:
Hydrolase, Neuraminidase, Hemagglutinin, Sialidase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. Zaitsev, M. Von Itzstein, D. Groves, M. Kiefel, T. Takimoto, A. Portner, G. Taylor
Second Sialic Acid Binding Site In Newcastle Disease Virus Hemagglutinin-Neuraminidase: Implications For Fusion
J. Virol. V. 78 3733 2004
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: 2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURA... (DANa)
1b: 2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURA... (DANb)
1c: 2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURA... (DANc)
2a: O-SIALIC ACID (SIAa)
2b: O-SIALIC ACID (SIAb)
2c: O-SIALIC ACID (SIAc)
3a: METHYL(6S)-1-THIO-L-MANNO-HEXODIAL... (WIAa)
3b: METHYL(6S)-1-THIO-L-MANNO-HEXODIAL... (WIAb)
3c: METHYL(6S)-1-THIO-L-MANNO-HEXODIAL... (WIAc)
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:174 , GLU A:258 , TYR A:299 , TYR A:317 , ARG A:363 , GLU A:401 , ARG A:416 , VAL A:466 , ARG A:498 , TYR A:526
BINDING SITE FOR RESIDUE DAN A1570
2
AC2
SOFTWARE
ARG B:174 , ILE B:175 , GLU B:258 , TYR B:317 , GLU B:401 , ARG B:416 , ARG B:498 , TYR B:526
BINDING SITE FOR RESIDUE DAN B1572
3
AC3
SOFTWARE
ARG C:174 , GLU C:258 , TYR C:317 , GLU C:401 , ARG C:416 , ARG C:498 , TYR C:526
BINDING SITE FOR RESIDUE DAN C1572
4
AC4
SOFTWARE
PHE A:156 , THR A:515 , ARG A:516 , VAL A:517 , SER A:519 , THR B:168 , GLY B:169
BINDING SITE FOR RESIDUES SIA A1571 AND WIA A1572
5
AC5
SOFTWARE
THR A:168 , GLY A:169 , PHE B:156 , THR B:515 , ARG B:516 , VAL B:517 , SER B:518 , SER B:519
BINDING SITE FOR RESIDUES SIA B1570 AND WIA B1571
6
AC6
SOFTWARE
PHE C:156 , GLY C:169 , THR C:515 , ARG C:516 , VAL C:517 , SER C:518 , SER C:519
BINDING SITE FOR RESIDUES SIA C1570 AND WIA C1571
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d1usxa_ (A:)
1b: SCOP_d1usxc_ (C:)
1c: SCOP_d1usxb_ (B:)
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Class
:
All beta proteins
(24004)
Fold
:
6-bladed beta-propeller
(327)
Superfamily
:
Sialidases
(238)
Family
:
Sialidases (neuraminidases)
(178)
Protein domain
:
Paramyxovirus hemagglutinin-neuraminidase head domain
(5)
Newcastle disease virus [TaxId: 11176]
(5)
1a
d1usxa_
A:
1b
d1usxc_
C:
1c
d1usxb_
B:
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_1usxA00 (A:124-570)
1b: CATH_1usxC00 (C:124-570)
1c: CATH_1usxB00 (B:124-570)
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Organisms
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Class
:
Mainly Beta
(13760)
Architecture
:
6 Propellor
(215)
Topology
:
Neuraminidase
(215)
Homologous Superfamily
:
[code=2.120.10.10, no name defined]
(150)
Newcastle disease virus. Organism_taxid: 11176. Strain: kansas
(5)
1a
1usxA00
A:124-570
1b
1usxC00
C:124-570
1c
1usxB00
B:124-570
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Pfam Domains
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Asym.Unit (218 KB)
Header - Asym.Unit
Biol.Unit 1 (281 KB)
Header - Biol.Unit 1
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