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1USR
Asym. Unit
Info
Asym.Unit (166 KB)
Biol.Unit 1 (161 KB)
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(1)
Title
:
NEWCASTLE DISEASE VIRUS HEMAGGLUTININ-NEURAMINIDASE: EVIDENCE FOR A SECOND SIALIC ACID BINDING SITE AND IMPLICATIONS FOR FUSION
Authors
:
V. Zaitsev, M. Von Itzstein, D. Groves, M. Kiefel, T. Takimoto, A. Portner, G. Taylor
Date
:
28 Nov 03 (Deposition) - 02 Jan 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Hydrolase, Sialidase, Neuraminidase, Hemagglutinin-Neuraminidase, Hemagglutinin, Glycoprotein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. Zaitsev, M. Von Itzstein, D. Groves, M. Kiefel, T. Takimoto, A. Portner, G. Taylor
Second Sialic Acid Binding Site In Newcastle Disease Virus Hemagglutinin-Neuraminidase: Implications For Fusion
J. Virol. V. 78 3733 2004
(for further references see the
PDB file header
)
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Hetero Components
(5, 9)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
2a: 2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURA... (DANa)
2b: 2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURA... (DANb)
3a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
3b: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGb)
4a: O-SIALIC ACID (SIAa)
4b: O-SIALIC ACID (SIAb)
5a: METHYL(6S)-1-THIO-L-MANNO-HEXODIAL... (WIAa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CA
2
Ligand/Ion
CALCIUM ION
2
DAN
2
Ligand/Ion
2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID
3
NDG
2
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
4
SIA
2
Ligand/Ion
O-SIALIC ACID
5
WIA
1
Ligand/Ion
METHYL(6S)-1-THIO-L-MANNO-HEXODIALDO-6,2-PYRANOSIDE
[
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA A:155 , PHE A:156 , THR A:515 , ARG A:516 , VAL A:517 , SER A:518 , SER A:519 , WIA A:1578 , HOH A:2039 , HOH A:2437 , HOH A:2439 , HOH A:2440 , HOH A:2441 , THR B:168 , GLY B:169 , ARG B:353
BINDING SITE FOR RESIDUE SIA A1571
2
AC2
SOFTWARE
GLY A:169 , ALA B:155 , PHE B:156 , THR B:515 , ARG B:516 , VAL B:517 , SER B:518 , SER B:519 , HOH B:2420 , HOH B:2463 , HOH B:2464 , HOH B:2465
BINDING SITE FOR RESIDUE SIA B1572
3
AC3
SOFTWARE
TYR A:479 , ASN A:481 , THR A:483 , HOH A:2362 , HOH A:2447 , HOH A:2448 , HOH A:2449 , HOH A:2450 , HOH A:2451 , THR B:232 , GLN B:233
BINDING SITE FOR RESIDUE NDG A1573
4
AC4
SOFTWARE
TYR B:479 , ASN B:481 , THR B:483
BINDING SITE FOR RESIDUE NDG B1571
5
AC5
SOFTWARE
ASP A:261 , SER A:264 , VAL A:266 , VAL A:296
BINDING SITE FOR RESIDUE CA A1574
6
AC6
SOFTWARE
ASP B:261 , SER B:264 , VAL B:266 , VAL B:296 , HOH B:2153
BINDING SITE FOR RESIDUE CA B1573
7
AC7
SOFTWARE
ARG A:174 , GLU A:258 , TYR A:299 , TYR A:317 , ARG A:363 , GLU A:401 , ARG A:416 , ARG A:498 , TYR A:526 , HOH A:2203 , HOH A:2262 , HOH A:2307 , HOH A:2443 , HOH A:2444 , HOH A:2445 , HOH A:2446
BINDING SITE FOR RESIDUE DAN A1572
8
AC8
SOFTWARE
SIA A:1571 , HOH A:2452 , HOH A:2453 , HOH A:2454 , ARG B:353
BINDING SITE FOR RESIDUE WIA A1578
9
AC9
SOFTWARE
ARG B:174 , GLU B:258 , TYR B:299 , TYR B:317 , GLU B:401 , ARG B:416 , ARG B:498 , TYR B:526 , HOH B:2222 , HOH B:2459 , HOH B:2460 , HOH B:2461 , HOH B:2462
BINDING SITE FOR RESIDUE DAN B1570
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1usra_ (A:)
1b: SCOP_d1usrb_ (B:)
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Protein Domains
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)
(
)
Organisms
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)
(
)
Class
:
All beta proteins
(24004)
Fold
:
6-bladed beta-propeller
(327)
Superfamily
:
Sialidases
(238)
Family
:
Sialidases (neuraminidases)
(178)
Protein domain
:
Paramyxovirus hemagglutinin-neuraminidase head domain
(5)
Newcastle disease virus [TaxId: 11176]
(5)
1a
d1usra_
A:
1b
d1usrb_
B:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1usrB00 (B:124-570)
1b: CATH_1usrA00 (A:124-571)
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Organisms
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Class
:
Mainly Beta
(13760)
Architecture
:
6 Propellor
(215)
Topology
:
Neuraminidase
(215)
Homologous Superfamily
:
[code=2.120.10.10, no name defined]
(150)
Newcastle disease virus. Organism_taxid: 11176. Strain: kansas
(5)
1a
1usrB00
B:124-570
1b
1usrA00
A:124-571
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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