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1USN
Biol. Unit 3
Info
Asym.Unit (38 KB)
Biol.Unit 1 (32 KB)
Biol.Unit 2 (90 KB)
Biol.Unit 3 (61 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF HUMAN FIBROBLAST STROMELYSIN-1 INHIBITED WITH THIADIAZOLE INHIBITOR PNU-142372
Authors
:
B. C. Finzel, G. L. Bryant Junior, E. T. Baldwin
Date
:
09 Jun 98 (Deposition) - 23 Dec 98 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Biol. Unit 2: A (3x)
Biol. Unit 3: A (2x)
Keywords
:
Hydrolase, Metalloprotease, Fibroblast, Collagen Degradation
(Keyword Search:
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Reference
:
B. C. Finzel, E. T. Baldwin, G. L. Bryant Jr. , G. F. Hess, J. W. Wilks, C. M. Trepod, J. E. Mott, V. P. Marshall, G. L. Petzold, R. A. Poorman, T. J. O'Sullivan, H. J. Schostarez, M. A. Mitchell
Structural Characterizations Of Nonpeptidic Thiadiazole Inhibitors Of Matrix Metalloproteinases Reveal The Basis Fo Stromelysin Selectivity.
Protein Sci. V. 7 2118 1998
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
2a: 2-[3-(5-MERCAPTO-[1,3,4]THIADIAZOL... (IN9a)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
IN9
2
Ligand/Ion
2-[3-(5-MERCAPTO-[1,3,4]THIADIAZOL-2YL)-UREIDO]-N-METHYL-3-PENTAFLUOROPHENYL-PROPIONAMIDE
3
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: CA1 (UNKNOWN)
09: CA2 (UNKNOWN)
10: CA3 (UNKNOWN)
11: INH (UNKNOWN)
12: ZN1 (UNKNOWN)
13: ZN2 (UNKNOWN)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:201 , HIS A:205 , HIS A:211 , IN9 A:300
BINDING SITE FOR RESIDUE ZN A 257
02
AC2
SOFTWARE
HIS A:151 , ASP A:153 , HIS A:166 , HIS A:179
BINDING SITE FOR RESIDUE ZN A 258
03
AC3
SOFTWARE
ASP A:158 , GLY A:159 , GLY A:161 , VAL A:163 , ASP A:181 , GLU A:184
BINDING SITE FOR RESIDUE CA A 259
04
AC4
SOFTWARE
ASP A:141 , GLY A:173 , ASN A:175 , ASP A:177 , HOH A:307 , HOH A:316
BINDING SITE FOR RESIDUE CA A 260
05
AC5
SOFTWARE
ASP A:107 , ASP A:182 , GLU A:184 , HOH A:321 , HOH A:331
BINDING SITE FOR RESIDUE CA A 261
06
AC6
SOFTWARE
HIS A:96 , HOH A:263
BINDING SITE FOR RESIDUE ZN A 262
07
AC7
SOFTWARE
TYR A:155 , HIS A:166 , ALA A:167 , TYR A:168 , ALA A:169 , THR A:190 , THR A:191 , GLU A:202 , HIS A:205 , HIS A:211 , ZN A:257 , HOH A:320 , HOH A:380
BINDING SITE FOR RESIDUE IN9 A 300
08
CA1
UNKNOWN
ASP A:158 , GLY A:159 , GLY A:161 , VAL A:163 , ASP A:181 , GLU A:184
CA1 ARE THE LIGANDS OF THE CALCIUM ION CA 259.
09
CA2
UNKNOWN
ASP A:141 , GLY A:173 , ASN A:175 , ASP A:177 , HOH A:306 , HOH A:312
CA2 ARE THE LIGANDS OF THE CALCIUM ION CA 260.
10
CA3
UNKNOWN
ASP A:107 , ASP A:182 , GLU A:184
CA3 ARE THE LIGANDS OF THE CALCIUM ION CA 261.
11
INH
UNKNOWN
PHE A:86 , TYR A:155 , HIS A:166 , ALA A:167 , TYR A:168 , ALA A:169 , HIS A:205 , PHE A:210
SITE INH IS THE BINDING SITE FOR THE UREA- THIADIAZOLE INHIBITOR PNU-142372; IN9 300.
12
ZN1
UNKNOWN
HIS A:201 , HIS A:205 , HIS A:211 , IN9 A:300
ZN1 ARE THE LIGANDS OF THE CATALYTIC (ZN 257) ZINC ION.
13
ZN2
UNKNOWN
HIS A:151 , ASP A:153 , HIS A:166 , HIS A:179
ZN2 ARE THE LIGANDS OF THE STRUCTURAL (ZN 258) ZINC ION.
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: ZINC_PROTEASE (A:198-207)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZINC_PROTEASE
PS00142
Neutral zinc metallopeptidases, zinc-binding region signature.
MMP3_HUMAN
215-224
2
A:198-207
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1usna_ (A:)
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Protein Domains
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(
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Organisms
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)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Zincin-like
(701)
Superfamily
:
Metalloproteases (zincins), catalytic domain
(647)
Family
:
Matrix metalloproteases, catalytic domain
(199)
Protein domain
:
Stromelysin-1 (MMP-3)
(40)
Human (Homo sapiens), fibroblast [TaxId: 9606]
(40)
1a
d1usna_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1usnA00 (A:83-247)
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Collagenase (Catalytic Domain)
(236)
Homologous Superfamily
:
Collagenase (Catalytic Domain)
(234)
Human (Homo sapiens)
(153)
1a
1usnA00
A:83-247
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Peptidase_M10_1usnA01 (A:91-247)
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Clan
:
Peptidase_MA
(251)
Family
:
Peptidase_M10
(85)
Homo sapiens (Human)
(82)
1a
Peptidase_M10-1usnA01
A:91-247
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Show PDB file:
Asym.Unit (38 KB)
Header - Asym.Unit
Biol.Unit 1 (32 KB)
Header - Biol.Unit 1
Biol.Unit 2 (90 KB)
Header - Biol.Unit 2
Biol.Unit 3 (61 KB)
Header - Biol.Unit 3
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