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1USH
Asym. Unit
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Asym.Unit (100 KB)
Biol.Unit 1 (94 KB)
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(1)
Title
:
5'-NUCLEOTIDASE FROM E. COLI
Authors
:
T. Knofel, N. Strater
Date
:
16 Sep 98 (Deposition) - 15 Jun 99 (Release) - 16 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.73
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
5'-Nucleotidase, Udp-Sugar Hydrolase, Phosphatase, Hydrolase (Phosphoric Monoester), Periplasmic Protein, Hydrolase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
T. Knofel, N. Strater
X-Ray Structure Of The Escherichia Coli Periplasmic 5'-Nucleotidase Containing A Dimetal Catalytic Site.
Nat. Struct. Biol. V. 6 448 1999
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Hetero Components
(3, 7)
Info
All Hetero Components
1a: CARBONATE ION (CO3a)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CO3
1
Ligand/Ion
CARBONATE ION
2
SO4
4
Ligand/Ion
SULFATE ION
3
ZN
2
Ligand/Ion
ZINC ION
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: ZNB (UNKNOWN)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:41 , HIS A:43 , ASP A:84 , GLN A:254 , ZN A:601 , CO3 A:602
BINDING SITE FOR RESIDUE ZN A 600
2
AC2
SOFTWARE
ASP A:84 , ASN A:116 , HIS A:217 , HIS A:252 , ZN A:600 , CO3 A:602
BINDING SITE FOR RESIDUE ZN A 601
3
AC3
SOFTWARE
ASP A:41 , ASP A:84 , ASN A:116 , HIS A:117 , HIS A:252 , GLN A:254 , THR A:518 , GLY A:519 , ZN A:600 , ZN A:601 , HOH A:1189
BINDING SITE FOR RESIDUE CO3 A 602
4
AC4
SOFTWARE
ARG A:375 , ARG A:379 , ARG A:410
BINDING SITE FOR RESIDUE SO4 A 603
5
AC5
SOFTWARE
TRP A:47 , ARG A:48 , HOH A:908 , HOH A:931 , HOH A:1147
BINDING SITE FOR RESIDUE SO4 A 604
6
AC6
SOFTWARE
ASN A:342 , GLN A:343 , HOH A:628 , HOH A:945
BINDING SITE FOR RESIDUE SO4 A 605
7
AC7
SOFTWARE
LYS A:68 , GLY A:148 , ARG A:190 , HOH A:862 , HOH A:975 , HOH A:1024 , HOH A:1183
BINDING SITE FOR RESIDUE SO4 A 606
8
ZNB
UNKNOWN
ASP A:41 , HIS A:43 , ASP A:84 , ASN A:116 , HIS A:217 , HIS A:252 , GLN A:254
ZN BINDING SITE
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: 5_NUCLEOTIDASE_1 (A:34-46)
2: 5_NUCLEOTIDASE_2 (A:109-120)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
5_NUCLEOTIDASE_1
PS00785
5'-nucleotidase signature 1.
USHA_ECOLI
34-46
1
A:34-46
2
5_NUCLEOTIDASE_2
PS00786
5'-nucleotidase signature 2.
USHA_ECOLI
109-120
1
A:109-120
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1usha1 (A:363-550)
2a: SCOP_d1usha2 (A:26-362)
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Classes
(
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)
Superfamilies
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)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
(10)
Superfamily
:
5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
(10)
Family
:
5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
(10)
Protein domain
:
5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
(10)
Escherichia coli [TaxId: 562]
(8)
1a
d1usha1
A:363-550
Fold
:
Metallo-dependent phosphatases
(115)
Superfamily
:
Metallo-dependent phosphatases
(115)
Family
:
5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain
(10)
Protein domain
:
5'-nucleotidase (syn. UDP-sugar hydrolase), N-terminal domain
(10)
Escherichia coli [TaxId: 562]
(8)
2a
d1usha2
A:26-362
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1ushA01 (A:26-362)
2a: CATH_1ushA02 (A:363-550)
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Classes
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)
(
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Architectures
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)
Topologies
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)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
4-Layer Sandwich
(459)
Topology
:
Purple Acid Phosphatase; chain A, domain 2
(87)
Homologous Superfamily
:
[code=3.60.21.10, no name defined]
(83)
Escherichia coli k12. Organism_taxid: 83333. Strain: k12.
(2)
1a
1ushA01
A:26-362
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
5'-nucleotidase; domain 2
(9)
Homologous Superfamily
:
5'-nucleotidase; Domain 2
(9)
Escherichia coli k12. Organism_taxid: 83333. Strain: k12.
(2)
2a
1ushA02
A:363-550
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Metallophos_1ushA01 (A:34-256)
2a: PFAM_5_nucleotid_C_1ushA02 (A:363-511)
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Clan
:
Calcineurin
(56)
Family
:
Metallophos
(45)
Escherichia coli (strain K12)
(4)
1a
Metallophos-1ushA01
A:34-256
Clan
:
no clan defined [family: 5_nucleotid_C]
(8)
Family
:
5_nucleotid_C
(8)
Escherichia coli (strain K12)
(4)
2a
5_nucleotid_C-1ushA02
A:363-511
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Asymmetric Unit 1
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