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1UR2
Asym. Unit
Info
Asym.Unit (78 KB)
Biol.Unit 1 (72 KB)
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(1)
Title
:
XYLANASE XYN10B MUTANT (E262S) FROM CELLVIBRIO MIXTUS IN COMPLEX WITH ARABINOFURANOSE ALPHA 1,3 LINKED TO XYLOTRIOSE
Authors
:
G. Pell, E. J. Taylor, T. M. Gloster, J. P. Turkenburg, C. M. G. A. Fontes, L. M. A. Ferreira, G. J. Davies, H. J. Gilbert
Date
:
24 Oct 03 (Deposition) - 18 Dec 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Hydrolase, Family 10, Xylanase, Glycoside Hydrolase, Hemicellulose, Xylan Degradation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Pell, E. J. Taylor, T. M. Gloster, J. P. Turkenburg, C. M. G. A. Fontes, L. M. A. Ferreira, T. Nagy, S. Clark, G. J. Davies, H. J. Gilbert
The Mechanisms By Which Family 10 Glycoside Hydrolases Bind Decorated Substrates
J. Biol. Chem. V. 279 9597 2004
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Hetero Components
(5, 10)
Info
All Hetero Components
1a: ALPHA-L-ARABINOFURANOSE (AHRa)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
3a: MAGNESIUM ION (MGa)
4a: BETA-D-XYLOPYRANOSE (XYPa)
4b: BETA-D-XYLOPYRANOSE (XYPb)
4c: BETA-D-XYLOPYRANOSE (XYPc)
4d: BETA-D-XYLOPYRANOSE (XYPd)
4e: BETA-D-XYLOPYRANOSE (XYPe)
5a: XYLOPYRANOSE (XYSa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AHR
1
Ligand/Ion
ALPHA-L-ARABINOFURANOSE
2
CL
2
Ligand/Ion
CHLORIDE ION
3
MG
1
Ligand/Ion
MAGNESIUM ION
4
XYP
5
Ligand/Ion
BETA-D-XYLOPYRANOSE
5
XYS
1
Ligand/Ion
XYLOPYRANOSE
[
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:201 , ARG A:204 , TRP A:272 , GLU A:273 , XYP A:1377 , HOH A:2454 , HOH A:2579
BINDING SITE FOR RESIDUE XYP A1376
02
AC2
SOFTWARE
ASN A:201 , XYP A:1376 , XYP A:1378 , HOH A:2579 , HOH A:2580 , HOH A:2581
BINDING SITE FOR RESIDUE XYP A1377
03
AC3
SOFTWARE
TRP A:108 , GLU A:157 , TYR A:200 , TRP A:336 , PHE A:340 , XYP A:1377 , XYS A:1379 , HOH A:2332 , HOH A:2582 , HOH A:2583 , HOH A:2584
BINDING SITE FOR RESIDUE XYP A1378
04
AC4
SOFTWARE
LYS A:71 , HIS A:104 , TRP A:108 , ASN A:156 , GLN A:231 , HIS A:233 , SER A:262 , TRP A:328 , TRP A:336 , XYP A:1378 , XYP A:1380 , HOH A:2447
BINDING SITE FOR RESIDUE XYS A1379
05
AC5
SOFTWARE
GLU A:67 , ASN A:68 , LYS A:71 , GLN A:111 , TRP A:328 , TRP A:336 , XYS A:1379 , XYP A:1381 , AHR A:1382
BINDING SITE FOR RESIDUE XYP A1380
06
AC6
SOFTWARE
XYP A:1380 , AHR A:1382 , HOH A:2585 , HOH A:2586 , HOH A:2587
BINDING SITE FOR RESIDUE XYP A1381
07
AC7
SOFTWARE
GLU A:67 , ASN A:68 , XYP A:1380 , XYP A:1381 , HOH A:2103 , HOH A:2533 , HOH A:2588 , HOH A:2589 , HOH A:2590 , HOH A:2591
BINDING SITE FOR RESIDUE AHR A1382
08
AC8
SOFTWARE
ASN A:42 , ALA A:43 , ASN A:68 , HOH A:2081
BINDING SITE FOR RESIDUE CL A1383
09
AC9
SOFTWARE
PRO A:297 , HOH A:2262 , HOH A:2479 , HOH A:2487
BINDING SITE FOR RESIDUE CL A1384
10
BC1
SOFTWARE
HOH A:2088 , HOH A:2089 , HOH A:2091 , HOH A:2175 , HOH A:2313 , HOH A:2315
BINDING SITE FOR RESIDUE MG A1385
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1ur2a_ (A:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
beta-glycanases
(284)
Protein domain
:
Xylanase
(19)
Cellvibrio mixtus [TaxId: 39650]
(4)
1a
d1ur2a_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1ur2A00 (A:25-375)
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)
Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Glycosidases
(843)
Cellvibrio mixtus. Organism_taxid: 39650.
(5)
1a
1ur2A00
A:25-375
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Glyco_hydro_10_1ur2A01 (A:26-369)
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Clans
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)
Clan
:
Glyco_hydro_tim
(488)
Family
:
Glyco_hydro_10
(42)
Cellvibrio mixtus
(4)
1a
Glyco_hydro_10-1ur2A01
A:26-369
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Chain A
Asymmetric Unit 1
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