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1UQR
Asym. Unit
Info
Asym.Unit (333 KB)
Biol.Unit 1 (326 KB)
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(1)
Title
:
TYPE II 3-DEHYDROQUINATE DEHYDRATASE (DHQASE) FROM ACTINOBACILLUS PLEUROPNEUMONIAE
Authors
:
D. Maes, L. A. Gonzalez-Ramirez, J. Lopez-Jaramillo, B. Yu, H. De Bondt, I. Zegers, E. Afonina, J. M. Garcia-Ruiz, S. Gulnik
Date
:
16 Oct 03 (Deposition) - 30 Oct 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L (1x)
Keywords
:
Shikimate Pathway, Aromatic Amino Acid Biosynthesis, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Maes, L. A. Gonzalez-Ramirez, J. Lopez-Jaramillo, B. Yu, H. De Bondt, I. Zegers, E. Afonina, J. M. Garcia-Ruiz, S. Gulnik
Structural Study Of The Type Ii 3-Dehydroquinate Dehydratase From Actinobacillus Pleuropneumoniae
Acta Crystallogr. , Sect. D V. 60 463 2004
[
close entry info
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Hetero Components
(2, 35)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1aa: SULFATE ION (SO4aa)
1ab: SULFATE ION (SO4ab)
1ac: SULFATE ION (SO4ac)
1ad: SULFATE ION (SO4ad)
1ae: SULFATE ION (SO4ae)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
1e: SULFATE ION (SO4e)
1f: SULFATE ION (SO4f)
1g: SULFATE ION (SO4g)
1h: SULFATE ION (SO4h)
1i: SULFATE ION (SO4i)
1j: SULFATE ION (SO4j)
1k: SULFATE ION (SO4k)
1l: SULFATE ION (SO4l)
1m: SULFATE ION (SO4m)
1n: SULFATE ION (SO4n)
1o: SULFATE ION (SO4o)
1p: SULFATE ION (SO4p)
1q: SULFATE ION (SO4q)
1r: SULFATE ION (SO4r)
1s: SULFATE ION (SO4s)
1t: SULFATE ION (SO4t)
1u: SULFATE ION (SO4u)
1v: SULFATE ION (SO4v)
1w: SULFATE ION (SO4w)
1x: SULFATE ION (SO4x)
1y: SULFATE ION (SO4y)
1z: SULFATE ION (SO4z)
2a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
2b: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSb)
2c: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSc)
2d: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
31
Ligand/Ion
SULFATE ION
2
TRS
4
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
[
close Hetero Component info
]
Sites
(35, 35)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:53 , GLU A:54 , GLU A:55 , HOH A:2098 , HOH A:2191 , HOH A:2192 , GLY B:53 , GLU B:54 , GLU B:55 , HOH B:2098 , HOH B:2103 , GLY C:53 , GLU C:54 , GLU C:55 , HOH C:2102 , HOH C:2104
BINDING SITE FOR RESIDUE SO4 A1147
02
AC2
SOFTWARE
ASN A:74 , LEU A:101 , SER A:102 , HOH A:2136 , HOH A:2193 , HOH A:2194 , HOH A:2195
BINDING SITE FOR RESIDUE SO4 A1148
03
AC3
SOFTWARE
ASN B:74 , HIS B:100 , LEU B:101 , SER B:102 , HOH B:2155 , HOH B:2156 , HOH B:2199 , HOH B:2200 , HOH B:2202
BINDING SITE FOR RESIDUE SO4 B1147
04
AC4
SOFTWARE
LYS B:17 , THR B:27 , SER B:29 , HOH B:2203
BINDING SITE FOR RESIDUE SO4 B1148
05
AC5
SOFTWARE
ASN C:74 , HIS C:100 , LEU C:101 , SER C:102 , HOH C:2208 , HOH C:2209 , HOH C:2210
BINDING SITE FOR RESIDUE SO4 C1154
06
AC6
SOFTWARE
LYS C:17 , THR C:27 , SER C:29 , HOH C:2211 , HOH C:2212 , HOH C:2213
BINDING SITE FOR RESIDUE SO4 C1155
07
AC7
SOFTWARE
LEU C:15 , GLY C:16 , LYS C:17 , ARG C:18 , HOH C:2215 , HOH C:2216
BINDING SITE FOR RESIDUE SO4 C1156
08
AC8
SOFTWARE
ASN D:74 , HIS D:100 , LEU D:101 , SER D:102 , HOH D:2031 , HOH D:2201 , HOH D:2202
BINDING SITE FOR RESIDUE SO4 D1152
09
AC9
SOFTWARE
LYS D:17 , THR D:27 , SER D:29 , HOH D:2042 , HOH D:2203
BINDING SITE FOR RESIDUE SO4 D1153
10
BC1
SOFTWARE
LEU D:15 , GLY D:16 , LYS D:17 , ARG D:18 , HIS D:21 , ILE D:22 , TYR D:23 , GLY D:24
BINDING SITE FOR RESIDUE SO4 D1154
11
BC2
SOFTWARE
ASN E:74 , HIS E:100 , LEU E:101 , SER E:102 , HOH E:2025 , HOH E:2119 , HOH E:2160
BINDING SITE FOR RESIDUE SO4 E1147
12
BC3
SOFTWARE
LYS E:17 , THR E:27 , HOH E:2161 , HOH E:2162
BINDING SITE FOR RESIDUE SO4 E1148
13
BC4
SOFTWARE
LEU E:15 , GLY E:16 , LYS E:17 , ARG E:18 , ILE E:22 , TYR E:23 , GLY E:24 , HOH E:2026
BINDING SITE FOR RESIDUE SO4 E1149
14
BC5
SOFTWARE
GLY D:53 , GLU D:54 , GLU D:55 , HOH D:2098 , HOH D:2099 , HOH D:2107 , GLY E:53 , GLU E:54 , GLU E:55 , GLY F:53 , GLU F:54 , GLU F:55 , HOH F:2107 , HOH F:2108 , HOH F:2206 , HOH F:2207
BINDING SITE FOR RESIDUE SO4 F1152
15
BC6
SOFTWARE
ASN F:74 , LEU F:101 , SER F:102 , HOH F:2141 , HOH F:2153 , HOH F:2209 , HOH F:2210
BINDING SITE FOR RESIDUE SO4 F1153
16
BC7
SOFTWARE
LYS F:17 , THR F:27 , SER F:29 , HOH F:2211 , HOH F:2212 , MET K:151 , MET K:152
BINDING SITE FOR RESIDUE SO4 F1154
17
BC8
SOFTWARE
LEU F:15 , GLY F:16 , LYS F:17 , ARG F:18 , HOH F:2032 , HOH F:2213 , HOH F:2214 , HOH F:2215 , HOH F:2216
BINDING SITE FOR RESIDUE SO4 F1155
18
BC9
SOFTWARE
ASN G:74 , HIS G:100 , LEU G:101 , SER G:102 , HOH G:2156
BINDING SITE FOR RESIDUE SO4 G1147
19
CC1
SOFTWARE
GLY G:53 , GLU G:54 , GLU G:55 , HOH G:2065 , HOH G:2066 , GLY H:53 , GLU H:54 , GLU H:55 , HOH H:2084 , HOH H:2088 , HOH H:2192 , GLY I:53 , GLU I:54 , GLU I:55 , HOH I:2083 , HOH I:2085
BINDING SITE FOR RESIDUE SO4 H1154
20
CC2
SOFTWARE
ASN H:74 , HIS H:100 , LEU H:101 , SER H:102 , HOH H:2139 , HOH H:2193 , HOH H:2194 , HOH H:2195 , HOH H:2196
BINDING SITE FOR RESIDUE SO4 H1155
21
CC3
SOFTWARE
LYS H:17 , THR H:27 , SER H:29 , HOH H:2197 , HOH H:2198
BINDING SITE FOR RESIDUE SO4 H1156
22
CC4
SOFTWARE
LEU H:15 , GLY H:16 , ARG H:18
BINDING SITE FOR RESIDUE SO4 H1157
23
CC5
SOFTWARE
ASN I:74 , HIS I:100 , LEU I:101 , SER I:102 , HOH I:2019 , HOH I:2179
BINDING SITE FOR RESIDUE SO4 I1147
24
CC6
SOFTWARE
ASN J:74 , HIS J:100 , LEU J:101 , SER J:102 , HOH J:2029 , HOH J:2115 , HOH J:2149
BINDING SITE FOR RESIDUE SO4 J1147
25
CC7
SOFTWARE
LYS J:17 , THR J:27 , SER J:29 , HOH J:2150 , HOH J:2151
BINDING SITE FOR RESIDUE SO4 J1148
26
CC8
SOFTWARE
LEU J:15 , GLY J:16 , LYS J:17 , ARG J:18 , ILE J:22 , TYR J:23 , GLY J:24
BINDING SITE FOR RESIDUE SO4 J1149
27
CC9
SOFTWARE
ASN K:74 , HIS K:100 , LEU K:101 , SER K:102 , HOH K:2138 , HOH K:2194
BINDING SITE FOR RESIDUE SO4 K1152
28
DC1
SOFTWARE
LEU K:15 , GLY K:16 , LYS K:17 , ARG K:18 , HIS K:21 , ILE K:22 , TYR K:23 , GLY K:24
BINDING SITE FOR RESIDUE SO4 K1153
29
DC2
SOFTWARE
GLN F:36 , TYR F:48 , MET K:1 , HOH K:2001 , HOH K:2195 , HOH K:2196 , HOH K:2197 , HOH K:2198 , HOH K:2199
BINDING SITE FOR RESIDUE SO4 K1154
30
DC3
SOFTWARE
GLY J:53 , GLU J:54 , GLU J:55 , HOH J:2074 , GLY K:53 , GLU K:54 , GLU K:55 , HOH K:2090 , HOH K:2093 , GLY L:53 , GLU L:54 , GLU L:55 , HOH L:2084 , HOH L:2085 , HOH L:2088 , HOH L:2178
BINDING SITE FOR RESIDUE SO4 L1147
31
DC4
SOFTWARE
ASN L:74 , HIS L:100 , LEU L:101 , SER L:102 , HOH L:2130 , HOH L:2179 , HOH L:2180
BINDING SITE FOR RESIDUE SO4 L1148
32
DC5
SOFTWARE
GLU A:54 , THR A:81 , SER A:82 , GLU B:54 , THR B:81 , GLU C:54 , THR C:81 , SER C:82
BINDING SITE FOR RESIDUE TRS B1149
33
DC6
SOFTWARE
GLU D:54 , THR D:81 , SER D:82 , GLU E:54 , THR E:81 , GLU F:54 , THR F:81 , SER F:82
BINDING SITE FOR RESIDUE TRS E1150
34
DC7
SOFTWARE
GLU G:54 , THR G:81 , SER G:82 , GLU H:54 , THR H:81 , GLU I:54 , THR I:81 , SER I:82
BINDING SITE FOR RESIDUE TRS H1158
35
DC8
SOFTWARE
GLU J:54 , THR J:81 , SER J:82 , GLU K:54 , THR K:81 , GLU L:54 , THR L:81 , SER L:82
BINDING SITE FOR RESIDUE TRS K1155
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(1, 12)
Info
All PROSITE Patterns/Profiles
1: DEHYDROQUINASE_II (A:7-24,B:7-17,C:7-18,D:7-24,E:7-24...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DEHYDROQUINASE_II
PS01029
Dehydroquinase class II signature.
AROQ_ACTPL
7-24
12
A:7-24
B:7-17
C:7-18
D:7-24
E:7-24
F:7-18
G:7-18
H:7-18
I:7-19
J:7-24
K:7-24
L:7-17
[
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d1uqra_ (A:)
1b: SCOP_d1uqrb_ (B:)
1c: SCOP_d1uqrk_ (K:)
1d: SCOP_d1uqrl_ (L:)
1e: SCOP_d1uqrc_ (C:)
1f: SCOP_d1uqrd_ (D:)
1g: SCOP_d1uqre_ (E:)
1h: SCOP_d1uqrf_ (F:)
1i: SCOP_d1uqrg_ (G:)
1j: SCOP_d1uqrh_ (H:)
1k: SCOP_d1uqri_ (I:)
1l: SCOP_d1uqrj_ (J:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Flavodoxin-like
(1057)
Superfamily
:
Type II 3-dehydroquinate dehydratase
(40)
Family
:
Type II 3-dehydroquinate dehydratase
(38)
Protein domain
:
Type II 3-dehydroquinate dehydratase
(20)
Actinobacillus pleuropneumoniae [TaxId: 715]
(1)
1a
d1uqra_
A:
1b
d1uqrb_
B:
1c
d1uqrk_
K:
1d
d1uqrl_
L:
1e
d1uqrc_
C:
1f
d1uqrd_
D:
1g
d1uqre_
E:
1h
d1uqrf_
F:
1i
d1uqrg_
G:
1j
d1uqrh_
H:
1k
d1uqri_
I:
1l
d1uqrj_
J:
[
close SCOP info
]
CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_1uqrC00 (C:1-154)
1b: CATH_1uqrH00 (H:1-154)
1c: CATH_1uqrB00 (B:1-146)
1d: CATH_1uqrL00 (L:1-146)
1e: CATH_1uqrA00 (A:1-146)
1f: CATH_1uqrF00 (F:1-152)
1g: CATH_1uqrJ00 (J:1-146)
1h: CATH_1uqrE00 (E:1-146)
1i: CATH_1uqrD00 (D:1-152)
1j: CATH_1uqrK00 (K:1-152)
1k: CATH_1uqrI00 (I:1-146)
1l: CATH_1uqrG00 (G:1-146)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.9100, no name defined]
(22)
Actinobacillus pleuropneumoniae. Organism_taxid: 715.
(1)
1a
1uqrC00
C:1-154
1b
1uqrH00
H:1-154
1c
1uqrB00
B:1-146
1d
1uqrL00
L:1-146
1e
1uqrA00
A:1-146
1f
1uqrF00
F:1-152
1g
1uqrJ00
J:1-146
1h
1uqrE00
E:1-146
1i
1uqrD00
D:1-152
1j
1uqrK00
K:1-152
1k
1uqrI00
I:1-146
1l
1uqrG00
G:1-146
[
close CATH info
]
Pfam Domains
(1, 12)
Info
all PFAM domains
1a: PFAM_DHquinase_II_1uqrL01 (L:2-141)
1b: PFAM_DHquinase_II_1uqrL02 (L:2-141)
1c: PFAM_DHquinase_II_1uqrL03 (L:2-141)
1d: PFAM_DHquinase_II_1uqrL04 (L:2-141)
1e: PFAM_DHquinase_II_1uqrL05 (L:2-141)
1f: PFAM_DHquinase_II_1uqrL06 (L:2-141)
1g: PFAM_DHquinase_II_1uqrL07 (L:2-141)
1h: PFAM_DHquinase_II_1uqrL08 (L:2-141)
1i: PFAM_DHquinase_II_1uqrL09 (L:2-141)
1j: PFAM_DHquinase_II_1uqrL10 (L:2-141)
1k: PFAM_DHquinase_II_1uqrL11 (L:2-141)
1l: PFAM_DHquinase_II_1uqrL12 (L:2-141)
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Clan
:
no clan defined [family: DHquinase_II]
(16)
Family
:
DHquinase_II
(16)
Actinobacillus pleuropneumoniae (Haemophilus pleuropneumoniae)
(1)
1a
DHquinase_II-1uqrL01
L:2-141
1b
DHquinase_II-1uqrL02
L:2-141
1c
DHquinase_II-1uqrL03
L:2-141
1d
DHquinase_II-1uqrL04
L:2-141
1e
DHquinase_II-1uqrL05
L:2-141
1f
DHquinase_II-1uqrL06
L:2-141
1g
DHquinase_II-1uqrL07
L:2-141
1h
DHquinase_II-1uqrL08
L:2-141
1i
DHquinase_II-1uqrL09
L:2-141
1j
DHquinase_II-1uqrL10
L:2-141
1k
DHquinase_II-1uqrL11
L:2-141
1l
DHquinase_II-1uqrL12
L:2-141
[
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