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1UPV
Asym. Unit
Info
Asym.Unit (46 KB)
Biol.Unit 1 (41 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE HUMAN LIVER X RECEPTOR BETA LIGAND BINDING DOMAIN IN COMPLEX WITH A SYNTHETIC AGONIST
Authors
:
S. Hoerer, A. Schmid, A. Heckel, R. M. Budzinski, H. Nar
Date
:
13 Oct 03 (Deposition) - 20 Oct 04 (Release) - 25 Aug 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Receptor, Nuclear Hormone Receptor, Ligand Binding Domain, Liver X Receptor, Crystal Structure, Transcription Factor
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Hoerer, A. Schmid, A. Heckel, R. M. Budzinski, H. Nar
Crystal Structure Of The Human Liver X Receptor Beta Ligand-Binding Domain In Complex With A Synthetic Agonist
J. Mol. Biol. V. 334 853 2003
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: N-(2,2,2-TRIFLUOROETHYL)-N-{4-[2,2... (444a)
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Label:
No.
Name
Count
Type
Full Name
1
444
1
Ligand/Ion
N-(2,2,2-TRIFLUOROETHYL)-N-{4-[2,2,2-TRIFLUORO-1-HYDROXY-1-(TRIFLUOROMETHYL)ETHYL]PHENYL}BENZENESULFONAMIDE
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE A:268 , PHE A:271 , LEU A:274 , ALA A:275 , ILE A:309 , MET A:312 , LEU A:313 , THR A:316 , ILE A:327 , LEU A:345 , ILE A:353 , HIS A:435 , LEU A:442 , LEU A:449 , TRP A:457 , HOH A:2022 , HOH A:2031
BINDING SITE FOR RESIDUE 444 A 462
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Sorry, no Info available
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Exons
(5, 5)
Info
All Exons
Exon 1.6 (A:219-250 (gaps))
Exon 1.7 (A:251-310)
Exon 1.8 (A:311-344)
Exon 1.9b (A:344-413)
Exon 1.10c (A:414-461)
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All Exon Boundaries
1: Boundary 1.5/1.6
2: Boundary 1.6/1.7
3: Boundary 1.7/1.8
4: Boundary 1.8/1.9b
5: Boundary 1.9b/1.10c
6: Boundary 1.10c/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000253727
1a
ENSE00001386247
chr19:
50879685-50879833
149
NR1H2_HUMAN
-
0
0
-
-
1.2
ENST00000253727
2
ENSE00001382965
chr19:
50879976-50880083
108
NR1H2_HUMAN
-
0
0
-
-
1.3a
ENST00000253727
3a
ENSE00001124993
chr19:
50880844-50880905
62
NR1H2_HUMAN
1-15
15
0
-
-
1.4
ENST00000253727
4
ENSE00000900338
chr19:
50880990-50881127
138
NR1H2_HUMAN
15-61
47
0
-
-
1.5
ENST00000253727
5
ENSE00000900341
chr19:
50881406-50881696
291
NR1H2_HUMAN
61-158
98
0
-
-
1.6
ENST00000253727
6
ENSE00000900344
chr19:
50881779-50882053
275
NR1H2_HUMAN
158-249
92
1
A:219-250 (gaps)
32
1.7
ENST00000253727
7
ENSE00000900347
chr19:
50882259-50882438
180
NR1H2_HUMAN
250-309
60
1
A:251-310
60
1.8
ENST00000253727
8
ENSE00000900350
chr19:
50883037-50883136
100
NR1H2_HUMAN
310-343
34
1
A:311-344
34
1.9b
ENST00000253727
9b
ENSE00000900352
chr19:
50885223-50885431
209
NR1H2_HUMAN
343-412
70
1
A:344-413
70
1.10c
ENST00000253727
10c
ENSE00001124989
chr19:
50885713-50886266
554
NR1H2_HUMAN
413-460
48
1
A:414-461
48
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SCOP Domains
(1, 1)
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All SCOP Domains
1a: SCOP_d1upva_ (A:)
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Class
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All alpha proteins
(14657)
Fold
:
Nuclear receptor ligand-binding domain
(609)
Superfamily
:
Nuclear receptor ligand-binding domain
(609)
Family
:
Nuclear receptor ligand-binding domain
(598)
Protein domain
:
Oxysterols receptor LXR-beta
(6)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d1upva_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1upvA00 (A:219-461)
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Retinoid X Receptor
(409)
Homologous Superfamily
:
Retinoid X Receptor
(409)
Human (Homo sapiens)
(337)
1a
1upvA00
A:219-461
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Hormone_recep_1upvA01 (A:254-449)
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Clan
:
no clan defined [family: Hormone_recep]
(290)
Family
:
Hormone_recep
(290)
Homo sapiens (Human)
(244)
1a
Hormone_recep-1upvA01
A:254-449
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Chain A
Asymmetric Unit 1
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Asym.Unit (46 KB)
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