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1UPN
Biol. Unit 1
Info
Asym.Unit (137 KB)
Biol.Unit 1, α-C (7.4 MB)
Biol.Unit 1 (7.4 MB)
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(1)
Title
:
COMPLEX OF ECHOVIRUS TYPE 12 WITH DOMAINS 3 AND 4 OF ITS RECEPTOR DECAY ACCELERATING FACTOR (CD55) BY CRYO ELECTRON MICROSCOPY AT 16 A
Authors
:
D. Bhella, I. G. Goodfellow, P. Roversi, D. Pettigrew, Y. Chaudry, D. J. S. M. Lea
Date
:
08 Oct 03 (Deposition) - 07 Jan 04 (Release) - 19 Apr 17 (Revision)
Method
:
ELECTRON MICROSCOPY
Resolution
:
16.00
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B,C,D,E (60x)
Keywords
:
Virus/Receptor, Complex (Virus Coat-Immune Protein), Echovirus, Picornavirus, Cd55, Daf, Virus-Receptor Complex, Icosahedral Virus
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Reference
:
D. Bhella, I. G. Goodfellow, P. Roversi, D. Pettigrew, Y. Chaudhry, D. J. Evans, S. M. Lea
The Structure Of Echovirus Type 12 Bound To A Two-Domain Fragment Of Its Cellular Attachment Protein Decay-Accelerating Factor (Cd 55)
J. Biol. Chem. V. 279 8325 2004
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Hetero Components
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(3, 180)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_002000 (S43L, chain E, )
2: VAR_002001 (A71P, chain E, )
3: VAR_015884 (R84H, chain E, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_002000
S
199
L
DAF_HUMAN
Polymorphism
56283594
E
S
43
L
2
UniProt
VAR_002001
A
227
P
DAF_HUMAN
Polymorphism
60822373
E
A
71
P
3
UniProt
VAR_015884
R
240
H
DAF_HUMAN
Polymorphism
---
E
R
84
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 120)
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1: SUSHI ()
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SUSHI
PS50923
Sushi/CCP/SCR domain profile.
DAF_HUMAN
96-160
34-94
161-222
223-285
120
-
-
E:5-66
E:67-129
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(2, 5)
Info
All SCOP Domains
1a: SCOP_d1upn_1 (D:,B:)
1b: SCOP_d1upna_ (A:)
1c: SCOP_d1upnc_ (C:)
2a: SCOP_d1upne1 (E:5-66)
2b: SCOP_d1upne2 (E:67-129)
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Class
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All beta proteins
(24004)
Fold
:
Nucleoplasmin-like/VP (viral coat and capsid proteins)
(278)
Superfamily
:
Positive stranded ssRNA viruses
(163)
Family
:
Picornaviridae-like VP (VP1, VP2, VP3 and VP4)
(103)
Protein domain
:
Human enterovirus B coat proteins
(7)
Human echovirus 11 [TaxId: 12078]
(3)
1a
d1upn.1
D:,B:
1b
d1upna_
A:
1c
d1upnc_
C:
Class
:
Small proteins
(3458)
Fold
:
Complement control module/SCR domain
(70)
Superfamily
:
Complement control module/SCR domain
(70)
Family
:
Complement control module/SCR domain
(67)
Protein domain
:
Complement decay-accelerating factor (Daf, CD55)
(18)
Human (Homo sapiens) [TaxId: 9606]
(18)
2a
d1upne1
E:5-66
2b
d1upne2
E:67-129
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CATH Domains
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Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_Rhv_1upnC01 (C:28-198)
1b: PFAM_Rhv_1upnC02 (C:28-198)
1c: PFAM_Rhv_1upnC03 (C:28-198)
2a: PFAM_Pico_P1A_1upnD01 (D:2-69)
3a: PFAM_Sushi_1upnE01 (E:69-127)
3b: PFAM_Sushi_1upnE02 (E:69-127)
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Organisms
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Clan
:
Viral_ssRNA_CP
(106)
Family
:
Rhv
(55)
Human echovirus 11
(1)
1a
Rhv-1upnC01
C:28-198
1b
Rhv-1upnC02
C:28-198
1c
Rhv-1upnC03
C:28-198
Clan
:
no clan defined [family: Pico_P1A]
(41)
Family
:
Pico_P1A
(41)
Human echovirus 11
(1)
2a
Pico_P1A-1upnD01
D:2-69
Clan
:
no clan defined [family: Sushi]
(50)
Family
:
Sushi
(50)
Homo sapiens (Human)
(42)
3a
Sushi-1upnE01
E:69-127
3b
Sushi-1upnE02
E:69-127
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Asym.Unit (137 KB)
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