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1UPF
Asym. Unit
Info
Asym.Unit (158 KB)
Biol.Unit 1 (152 KB)
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(1)
Title
:
STRUCTURE OF THE URACIL PHOSPHORIBOSYLTRANSFERASE, MUTANT C128V BOUND TO THE DRUG 5-FLUOROURACIL
Authors
:
M. A. Schumacher, D. Carter, D. Scott, D. Roos, B. Ullman, R. G. Brennan
Date
:
17 Jun 98 (Deposition) - 22 Jun 99 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Transferase, Glycosyltransferase, Phosphoribosyltransferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. A. Schumacher, D. Carter, D. M. Scott, D. S. Roos, B. Ullman, R. G. Brennan
Crystal Structures Of Toxoplasma Gondii Uracil Phosphoribosyltransferase Reveal The Atomic Basis Of Pyrimidine Discrimination And Prodrug Binding.
Embo J. V. 17 3219 1998
(for further references see the
PDB file header
)
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Hetero Components
(2, 16)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
1e: SULFATE ION (SO4e)
1f: SULFATE ION (SO4f)
1g: SULFATE ION (SO4g)
1h: SULFATE ION (SO4h)
1i: SULFATE ION (SO4i)
1j: SULFATE ION (SO4j)
1k: SULFATE ION (SO4k)
1l: SULFATE ION (SO4l)
2a: 5-FLUOROURACIL (URFa)
2b: 5-FLUOROURACIL (URFb)
2c: 5-FLUOROURACIL (URFc)
2d: 5-FLUOROURACIL (URFd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
12
Ligand/Ion
SULFATE ION
2
URF
4
Ligand/Ion
5-FLUOROURACIL
[
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG D:137 , CYS D:167 , ALA D:168 , THR D:169 , ALA D:170 , GLY D:171 , SER D:172
BINDING SITE FOR RESIDUE SO4 D 799
02
AC2
SOFTWARE
LYS B:150 , VAL D:111 , ARG D:112 , ALA D:113 , GLY D:237 , HOH D:1005 , HOH D:1019
BINDING SITE FOR RESIDUE SO4 D 599
03
AC3
SOFTWARE
LYS B:59 , ARG D:129 , ARG D:158
BINDING SITE FOR RESIDUE SO4 D 899
04
AC4
SOFTWARE
ARG C:137 , ALA C:168 , THR C:169 , ALA C:170 , GLY C:171 , SER C:172 , HOH C:1013 , HOH C:1032 , HOH C:1069
BINDING SITE FOR RESIDUE SO4 C 799
05
AC5
SOFTWARE
ARG C:112 , ALA C:113 , GLY C:237
BINDING SITE FOR RESIDUE SO4 C 599
06
AC6
SOFTWARE
LYS A:59 , ARG C:129 , ARG C:158
BINDING SITE FOR RESIDUE SO4 C 899
07
AC7
SOFTWARE
ARG B:112 , ALA B:113 , GLY B:237 , HOH B:1011 , HOH B:1034
BINDING SITE FOR RESIDUE SO4 B 599
08
AC8
SOFTWARE
ARG B:137 , CYS B:167 , ALA B:168 , THR B:169 , ALA B:170 , GLY B:171 , SER B:172 , HOH B:1006
BINDING SITE FOR RESIDUE SO4 B 799
09
AC9
SOFTWARE
ARG B:129 , ARG B:158 , HOH B:1000 , HOH B:1005 , LYS D:59
BINDING SITE FOR RESIDUE SO4 B 899
10
BC1
SOFTWARE
ARG A:137 , ALA A:168 , THR A:169 , ALA A:170 , GLY A:171 , SER A:172
BINDING SITE FOR RESIDUE SO4 A 799
11
BC2
SOFTWARE
ARG A:129 , ARG A:158 , LYS C:59
BINDING SITE FOR RESIDUE SO4 A 899
12
BC3
SOFTWARE
ARG A:112 , ALA A:113 , GLY A:237
BINDING SITE FOR RESIDUE SO4 A 599
13
BC4
SOFTWARE
MET D:166 , ALA D:168 , TYR D:227 , TYR D:228 , ILE D:229 , GLY D:234 , PHE D:236
BINDING SITE FOR RESIDUE URF D 999
14
BC5
SOFTWARE
MET C:166 , ALA C:168 , TYR C:227 , TYR C:228 , ILE C:229 , GLY C:234 , ASP C:235 , PHE C:236 , HOH C:1003
BINDING SITE FOR RESIDUE URF C 999
15
BC6
SOFTWARE
MET B:166 , ALA B:168 , TYR B:227 , TYR B:228 , ILE B:229 , ILE B:233 , GLY B:234 , ASP B:235 , PHE B:236 , HOH B:1002
BINDING SITE FOR RESIDUE URF B 999
16
BC7
SOFTWARE
MET A:166 , ALA A:168 , TYR A:227 , TYR A:228 , ILE A:229 , GLY A:234 , ASP A:235 , PHE A:236 , HOH A:1013 , HOH A:1045
BINDING SITE FOR RESIDUE URF A 999
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1upfa_ (A:)
1b: SCOP_d1upfb_ (B:)
1c: SCOP_d1upfc_ (C:)
1d: SCOP_d1upfd_ (D:)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PRTase-like
(145)
Superfamily
:
PRTase-like
(145)
Family
:
Phosphoribosyltransferases (PRTases)
(100)
Protein domain
:
Uracil PRTase, Upp
(14)
Toxoplasma gondii [TaxId: 5811]
(6)
1a
d1upfa_
A:
1b
d1upfb_
B:
1c
d1upfc_
C:
1d
d1upfd_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1upfA00 (A:21-244)
1b: CATH_1upfB00 (B:21-244)
1c: CATH_1upfC00 (C:21-244)
1d: CATH_1upfD00 (D:21-244)
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Organisms
(
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(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.2020, no name defined]
(117)
Toxoplasma gondii. Organism_taxid: 5811.
(7)
1a
1upfA00
A:21-244
1b
1upfB00
B:21-244
1c
1upfC00
C:21-244
1d
1upfD00
D:21-244
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
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Asym.Unit (158 KB)
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