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1UOP
Asym. Unit
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Asym.Unit (144 KB)
Biol.Unit 1 (139 KB)
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(1)
Title
:
PROLYL OLIGOPEPTIDASE FROM PORCINE BRAIN, S554A MUTANT WITH BOUND PEPTIDE LIGAND GLY-PHE-GLU-PRO
Authors
:
D. Rea, V. Fulop
Date
:
22 Sep 03 (Deposition) - 02 Oct 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Hydrolase, Prolyl Oligopeptidase, Amnesia, Alpha/ Beta- Hydrolase, Beta-Propeller, Serine Protease
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Z. Szeltner, D. Rea, V. Renner, L. Juliano, V. Fulop, L. Polgar
Electrostatic Environment At The Active Site Of Prolyl Oligopeptidase Is Highly Influential During Substrate Binding
J. Biol. Chem. V. 278 48786 2003
(for further references see the
PDB file header
)
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Hetero Components
(1, 6)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GOL
6
Ligand/Ion
GLYCEROL
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ILE A:118 , LEU A:119 , SER A:120 , ASP A:121 , ASP A:446 , ASN A:522 , ASN A:525 , HOH A:3111 , HOH A:3112 , HOH A:3113
BINDING SITE FOR RESIDUE GOL A1711
2
AC2
SOFTWARE
ALA A:226 , GLU A:227 , PHE A:228 , ILE A:276 , LYS A:281 , HOH A:3114 , HOH A:3115 , HOH A:3116
BINDING SITE FOR RESIDUE GOL A1712
3
AC3
SOFTWARE
TRP A:150 , VAL A:151 , THR A:152 , GLU A:169 , ARG A:170 , VAL A:171 , SER A:197
BINDING SITE FOR RESIDUE GOL A1713
4
AC4
SOFTWARE
PRO A:568 , ASP A:569 , PHE A:571 , ASP A:627 , ILE A:628 , GLN A:629 , PRO A:631 , ASN A:668 , HOH A:3119
BINDING SITE FOR RESIDUE GOL A1714
5
AC5
SOFTWARE
GLU A:239 , ASP A:291 , TYR A:292 , HOH A:2602 , HOH A:3120
BINDING SITE FOR RESIDUE GOL A1715
6
AC6
SOFTWARE
TRP A:340 , VAL A:341 , TYR A:385 , HOH A:3120 , HOH A:3121
BINDING SITE FOR RESIDUE GOL A1716
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_PPCE_PIG_001 (A29H, chain A, )
View:
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_PPCE_PIG_001
*
A
29
H
PPCE_PIG
---
---
A
A
29
H
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: PRO_ENDOPEP_SER (A:529-559)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PRO_ENDOPEP_SER
PS00708
Prolyl endopeptidase family serine active site.
PPCE_PIG
529-559
1
A:529-559
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1uopa1 (A:1-430)
2a: SCOP_d1uopa2 (A:431-710)
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)
Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
7-bladed beta-propeller
(245)
Superfamily
:
Peptidase/esterase 'gauge' domain
(47)
Family
:
Prolyl oligopeptidase, N-terminal domain
(29)
Protein domain
:
Prolyl oligopeptidase, N-terminal domain
(27)
Pig (Sus scrofa) [TaxId: 9823]
(27)
1a
d1uopa1
A:1-430
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
alpha/beta-Hydrolases
(971)
Superfamily
:
alpha/beta-Hydrolases
(971)
Family
:
Prolyl oligopeptidase, C-terminal domain
(28)
Protein domain
:
Prolyl oligopeptidase, C-terminal domain
(27)
Pig (Sus scrofa) [TaxId: 9823]
(27)
2a
d1uopa2
A:431-710
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1uopA01 (A:1-73,A:427-710)
2a: CATH_1uopA02 (A:74-426)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1820, no name defined]
(692)
Pig (Sus scrofa)
(22)
1a
1uopA01
A:1-73,A:427-710
Class
:
Mainly Beta
(13760)
Architecture
:
7 Propellor
(136)
Topology
:
Methylamine Dehydrogenase; Chain H
(136)
Homologous Superfamily
:
Prolyl oligopeptidase, N-terminal domain
(21)
Pig (Sus scrofa)
(11)
2a
1uopA02
A:74-426
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Peptidase_S9_1uopA01 (A:482-707)
2a: PFAM_Peptidase_S9_N_1uopA02 (A:7-423)
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Clan
:
AB_hydrolase
(347)
Family
:
Peptidase_S9
(57)
Sus scrofa (Pig)
(11)
1a
Peptidase_S9-1uopA01
A:482-707
Clan
:
Beta_propeller
(192)
Family
:
Peptidase_S9_N
(11)
Sus scrofa (Pig)
(9)
2a
Peptidase_S9_N-1uopA02
A:7-423
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