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1UMZ
Biol. Unit 2
Info
Asym.Unit (107 KB)
Biol.Unit 1 (52 KB)
Biol.Unit 2 (52 KB)
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(1)
Title
:
XYLOGLUCAN ENDOTRANSGLYCOSYLASE IN COMPLEX WITH THE XYLOGLUCAN NONASACCHARIDE XLLG.
Authors
:
P. Johansson, H. Brumer, A. M. Kallas, H. Henriksson, S. E. Denman, T. T. Teeri, T. A. Jones
Date
:
03 Sep 03 (Deposition) - 18 Mar 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Glycoside Hydrolase, Xet, Xth, Xeh, Transglycosylation, Xyloglucan, Transferase, Glycosyltransferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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Reference
:
P. Johansson, H. Brumer, M. J. Baumann, A. M. Kallas, H. Henriksson, S. E. Denman, T. T. Teeri, T. A. Jones
Crystal Structures Of A Poplar Xyloglucan Endotransglycosylase Reveal Details Of Transglycosylation Acceptor Binding
Plant Cell V. 16 874 2004
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Hetero Components
(5, 9)
Info
All Hetero Components
1a: BETA-D-GLUCOSE (BGCa)
1b: BETA-D-GLUCOSE (BGCb)
1c: BETA-D-GLUCOSE (BGCc)
1d: BETA-D-GLUCOSE (BGCd)
1e: BETA-D-GLUCOSE (BGCe)
1f: BETA-D-GLUCOSE (BGCf)
2a: BETA-D-MANNOSE (BMAa)
2b: BETA-D-MANNOSE (BMAb)
3a: BETA-D-GALACTOSE (GALa)
3b: BETA-D-GALACTOSE (GALb)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
5a: XYLOPYRANOSE (XYSa)
5b: XYLOPYRANOSE (XYSb)
5c: XYLOPYRANOSE (XYSc)
5d: XYLOPYRANOSE (XYSd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
BGC
3
Ligand/Ion
BETA-D-GLUCOSE
2
BMA
1
Ligand/Ion
BETA-D-MANNOSE
3
GAL
1
Ligand/Ion
BETA-D-GALACTOSE
4
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
XYS
2
Ligand/Ion
XYLOPYRANOSE
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Sites
(9, 9)
Info
All Sites
1: BC1 (SOFTWARE)
2: BC2 (SOFTWARE)
3: BC3 (SOFTWARE)
4: BC4 (SOFTWARE)
5: BC5 (SOFTWARE)
6: BC6 (SOFTWARE)
7: BC7 (SOFTWARE)
8: BC8 (SOFTWARE)
9: BC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
BC1
SOFTWARE
LEU B:91 , GLY B:92 , ASN B:93 , GLN B:97 , PRO B:98 , ILE B:100 , TYR B:118 , ALA B:180 , THR B:181 , ARG B:182 , NAG B:1274 , HOH B:2041 , HOH B:2127 , HOH B:2128
BINDING SITE FOR RESIDUE NAG B1273
2
BC2
SOFTWARE
TYR B:118 , ARG B:182 , ILE B:249 , NAG B:1273 , BMA B:1275 , HOH B:2112 , HOH B:2127 , HOH B:2128 , HOH B:2129
BINDING SITE FOR RESIDUE NAG B1274
3
BC3
SOFTWARE
NAG B:1274
BINDING SITE FOR RESIDUE BMA B1275
4
BC4
SOFTWARE
GLU B:89 , GLN B:102 , ASN B:104 , GLU B:114 , TRP B:179 , BGC B:1277 , XYS B:1279 , HOH B:2130
BINDING SITE FOR RESIDUE BGC B1276
5
BC5
SOFTWARE
GLU B:114 , ARG B:116 , TRP B:179 , BGC B:1276 , BGC B:1278 , XYS B:1279 , XYS B:1280 , GAL B:1281
BINDING SITE FOR RESIDUE BGC B1277
6
BC6
SOFTWARE
TRP B:179 , GLY B:183 , BGC B:1277 , XYS B:1280 , GAL B:1281 , HOH B:2078
BINDING SITE FOR RESIDUE BGC B1278
7
BC7
SOFTWARE
TRP B:174 , ASP B:178 , TRP B:179 , BGC B:1276 , BGC B:1277 , HOH B:2131
BINDING SITE FOR RESIDUE XYS B1279
8
BC8
SOFTWARE
GLU B:114 , ARG B:116 , BGC B:1277 , BGC B:1278 , GAL B:1281 , HOH B:2132 , HOH B:2133
BINDING SITE FOR RESIDUE XYS B1280
9
BC9
SOFTWARE
ASP B:112 , GLU B:114 , ARG B:258 , BGC B:1277 , BGC B:1278 , XYS B:1280 , HOH B:2134
BINDING SITE FOR RESIDUE GAL B1281
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1umza_ (A:)
1b: SCOP_d1umzb_ (B:)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Concanavalin A-like lectins/glucanases
(797)
Superfamily
:
Concanavalin A-like lectins/glucanases
(797)
Family
:
Glycosyl hydrolases family 16
(29)
Protein domain
:
Xyloglucan endotransglycosylase
(2)
European aspen (Populus tremula) [TaxId: 113636]
(2)
1a
d1umza_
A:
1b
d1umzb_
B:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1umzB00 (B:9-272)
1b: CATH_1umzA00 (A:6-272)
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)
Organisms
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)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
[code=2.60.120.200, no name defined]
(421)
European aspen (Populus tremula)
(2)
1a
1umzB00
B:9-272
1b
1umzA00
A:6-272
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Glyco_hydro_16_1umzB01 (B:11-192)
1b: PFAM_Glyco_hydro_16_1umzB02 (B:11-192)
2a: PFAM_XET_C_1umzB03 (B:216-266)
2b: PFAM_XET_C_1umzB04 (B:216-266)
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Clan
:
Concanavalin
(293)
Family
:
Glyco_hydro_16
(16)
Populus tremula x Populus tremuloides
(2)
1a
Glyco_hydro_16-1umzB01
B:11-192
1b
Glyco_hydro_16-1umzB02
B:11-192
Clan
:
no clan defined [family: XET_C]
(6)
Family
:
XET_C
(6)
Populus tremula x Populus tremuloides
(2)
2a
XET_C-1umzB03
B:216-266
2b
XET_C-1umzB04
B:216-266
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Chain B
Asymmetric Unit 1
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Asym.Unit (107 KB)
Header - Asym.Unit
Biol.Unit 1 (52 KB)
Header - Biol.Unit 1
Biol.Unit 2 (52 KB)
Header - Biol.Unit 2
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