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1UMZ
Biol. Unit 1
Info
Asym.Unit (107 KB)
Biol.Unit 1 (52 KB)
Biol.Unit 2 (52 KB)
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(1)
Title
:
XYLOGLUCAN ENDOTRANSGLYCOSYLASE IN COMPLEX WITH THE XYLOGLUCAN NONASACCHARIDE XLLG.
Authors
:
P. Johansson, H. Brumer, A. M. Kallas, H. Henriksson, S. E. Denman, T. T. Teeri, T. A. Jones
Date
:
03 Sep 03 (Deposition) - 18 Mar 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Glycoside Hydrolase, Xet, Xth, Xeh, Transglycosylation, Xyloglucan, Transferase, Glycosyltransferase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
P. Johansson, H. Brumer, M. J. Baumann, A. M. Kallas, H. Henriksson, S. E. Denman, T. T. Teeri, T. A. Jones
Crystal Structures Of A Poplar Xyloglucan Endotransglycosylase Reveal Details Of Transglycosylation Acceptor Binding
Plant Cell V. 16 874 2004
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Hetero Components
(5, 9)
Info
All Hetero Components
1a: BETA-D-GLUCOSE (BGCa)
1b: BETA-D-GLUCOSE (BGCb)
1c: BETA-D-GLUCOSE (BGCc)
1d: BETA-D-GLUCOSE (BGCd)
1e: BETA-D-GLUCOSE (BGCe)
1f: BETA-D-GLUCOSE (BGCf)
2a: BETA-D-MANNOSE (BMAa)
2b: BETA-D-MANNOSE (BMAb)
3a: BETA-D-GALACTOSE (GALa)
3b: BETA-D-GALACTOSE (GALb)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
5a: XYLOPYRANOSE (XYSa)
5b: XYLOPYRANOSE (XYSb)
5c: XYLOPYRANOSE (XYSc)
5d: XYLOPYRANOSE (XYSd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
BGC
3
Ligand/Ion
BETA-D-GLUCOSE
2
BMA
1
Ligand/Ion
BETA-D-MANNOSE
3
GAL
1
Ligand/Ion
BETA-D-GALACTOSE
4
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
XYS
2
Ligand/Ion
XYLOPYRANOSE
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU A:91 , GLY A:92 , ASN A:93 , GLN A:97 , PRO A:98 , ILE A:100 , TYR A:118 , ALA A:180 , THR A:181 , ARG A:182 , NAG A:1274 , HOH A:2108 , HOH A:2109
BINDING SITE FOR RESIDUE NAG A1273
2
AC2
SOFTWARE
TYR A:118 , ARG A:182 , NAG A:1273 , BMA A:1275 , HOH A:2108 , HOH A:2110
BINDING SITE FOR RESIDUE NAG A1274
3
AC3
SOFTWARE
NAG A:1274
BINDING SITE FOR RESIDUE BMA A1275
4
AC4
SOFTWARE
ASP A:87 , GLU A:89 , GLN A:102 , ASN A:104 , GLU A:114 , BGC A:1277 , XYS A:1279 , HOH A:2111
BINDING SITE FOR RESIDUE BGC A1276
5
AC5
SOFTWARE
GLU A:114 , ARG A:116 , TRP A:179 , BGC A:1276 , BGC A:1278 , XYS A:1279 , XYS A:1280 , GAL A:1281
BINDING SITE FOR RESIDUE BGC A1277
6
AC6
SOFTWARE
TRP A:179 , GLY A:183 , BGC A:1277 , XYS A:1280 , HOH A:2082
BINDING SITE FOR RESIDUE BGC A1278
7
AC7
SOFTWARE
ASP A:178 , TRP A:179 , BGC A:1276 , BGC A:1277
BINDING SITE FOR RESIDUE XYS A1279
8
AC8
SOFTWARE
GLU A:114 , BGC A:1277 , BGC A:1278 , GAL A:1281
BINDING SITE FOR RESIDUE XYS A1280
9
AC9
SOFTWARE
ASP A:112 , GLU A:114 , ARG A:258 , BGC A:1277 , XYS A:1280 , HOH A:2057
BINDING SITE FOR RESIDUE GAL A1281
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1umza_ (A:)
1b: SCOP_d1umzb_ (B:)
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Protein Domains
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Organisms
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(
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Class
:
All beta proteins
(24004)
Fold
:
Concanavalin A-like lectins/glucanases
(797)
Superfamily
:
Concanavalin A-like lectins/glucanases
(797)
Family
:
Glycosyl hydrolases family 16
(29)
Protein domain
:
Xyloglucan endotransglycosylase
(2)
European aspen (Populus tremula) [TaxId: 113636]
(2)
1a
d1umza_
A:
1b
d1umzb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1umzB00 (B:9-272)
1b: CATH_1umzA00 (A:6-272)
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)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
[code=2.60.120.200, no name defined]
(421)
European aspen (Populus tremula)
(2)
1a
1umzB00
B:9-272
1b
1umzA00
A:6-272
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Glyco_hydro_16_1umzB01 (B:11-192)
1b: PFAM_Glyco_hydro_16_1umzB02 (B:11-192)
2a: PFAM_XET_C_1umzB03 (B:216-266)
2b: PFAM_XET_C_1umzB04 (B:216-266)
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Clan
:
Concanavalin
(293)
Family
:
Glyco_hydro_16
(16)
Populus tremula x Populus tremuloides
(2)
1a
Glyco_hydro_16-1umzB01
B:11-192
1b
Glyco_hydro_16-1umzB02
B:11-192
Clan
:
no clan defined [family: XET_C]
(6)
Family
:
XET_C
(6)
Populus tremula x Populus tremuloides
(2)
2a
XET_C-1umzB03
B:216-266
2b
XET_C-1umzB04
B:216-266
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Chain A
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (107 KB)
Header - Asym.Unit
Biol.Unit 1 (52 KB)
Header - Biol.Unit 1
Biol.Unit 2 (52 KB)
Header - Biol.Unit 2
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