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1UMZ
Asym. Unit
Info
Asym.Unit (107 KB)
Biol.Unit 1 (52 KB)
Biol.Unit 2 (52 KB)
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(1)
Title
:
XYLOGLUCAN ENDOTRANSGLYCOSYLASE IN COMPLEX WITH THE XYLOGLUCAN NONASACCHARIDE XLLG.
Authors
:
P. Johansson, H. Brumer, A. M. Kallas, H. Henriksson, S. E. Denman, T. T. Teeri, T. A. Jones
Date
:
03 Sep 03 (Deposition) - 18 Mar 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Glycoside Hydrolase, Xet, Xth, Xeh, Transglycosylation, Xyloglucan, Transferase, Glycosyltransferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Johansson, H. Brumer, M. J. Baumann, A. M. Kallas, H. Henriksson, S. E. Denman, T. T. Teeri, T. A. Jones
Crystal Structures Of A Poplar Xyloglucan Endotransglycosylase Reveal Details Of Transglycosylation Acceptor Binding
Plant Cell V. 16 874 2004
[
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Hetero Components
(5, 18)
Info
All Hetero Components
1a: BETA-D-GLUCOSE (BGCa)
1b: BETA-D-GLUCOSE (BGCb)
1c: BETA-D-GLUCOSE (BGCc)
1d: BETA-D-GLUCOSE (BGCd)
1e: BETA-D-GLUCOSE (BGCe)
1f: BETA-D-GLUCOSE (BGCf)
2a: BETA-D-MANNOSE (BMAa)
2b: BETA-D-MANNOSE (BMAb)
3a: BETA-D-GALACTOSE (GALa)
3b: BETA-D-GALACTOSE (GALb)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
5a: XYLOPYRANOSE (XYSa)
5b: XYLOPYRANOSE (XYSb)
5c: XYLOPYRANOSE (XYSc)
5d: XYLOPYRANOSE (XYSd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BGC
6
Ligand/Ion
BETA-D-GLUCOSE
2
BMA
2
Ligand/Ion
BETA-D-MANNOSE
3
GAL
2
Ligand/Ion
BETA-D-GALACTOSE
4
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
XYS
4
Ligand/Ion
XYLOPYRANOSE
[
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LEU A:91 , GLY A:92 , ASN A:93 , GLN A:97 , PRO A:98 , ILE A:100 , TYR A:118 , ALA A:180 , THR A:181 , ARG A:182 , NAG A:1274 , HOH A:2108 , HOH A:2109
BINDING SITE FOR RESIDUE NAG A1273
02
AC2
SOFTWARE
TYR A:118 , ARG A:182 , NAG A:1273 , BMA A:1275 , HOH A:2108 , HOH A:2110
BINDING SITE FOR RESIDUE NAG A1274
03
AC3
SOFTWARE
NAG A:1274
BINDING SITE FOR RESIDUE BMA A1275
04
AC4
SOFTWARE
ASP A:87 , GLU A:89 , GLN A:102 , ASN A:104 , GLU A:114 , BGC A:1277 , XYS A:1279 , HOH A:2111
BINDING SITE FOR RESIDUE BGC A1276
05
AC5
SOFTWARE
GLU A:114 , ARG A:116 , TRP A:179 , BGC A:1276 , BGC A:1278 , XYS A:1279 , XYS A:1280 , GAL A:1281
BINDING SITE FOR RESIDUE BGC A1277
06
AC6
SOFTWARE
TRP A:179 , GLY A:183 , BGC A:1277 , XYS A:1280 , HOH A:2082
BINDING SITE FOR RESIDUE BGC A1278
07
AC7
SOFTWARE
ASP A:178 , TRP A:179 , BGC A:1276 , BGC A:1277
BINDING SITE FOR RESIDUE XYS A1279
08
AC8
SOFTWARE
GLU A:114 , BGC A:1277 , BGC A:1278 , GAL A:1281
BINDING SITE FOR RESIDUE XYS A1280
09
AC9
SOFTWARE
ASP A:112 , GLU A:114 , ARG A:258 , BGC A:1277 , XYS A:1280 , HOH A:2057
BINDING SITE FOR RESIDUE GAL A1281
10
BC1
SOFTWARE
LEU B:91 , GLY B:92 , ASN B:93 , GLN B:97 , PRO B:98 , ILE B:100 , TYR B:118 , ALA B:180 , THR B:181 , ARG B:182 , NAG B:1274 , HOH B:2041 , HOH B:2127 , HOH B:2128
BINDING SITE FOR RESIDUE NAG B1273
11
BC2
SOFTWARE
TYR B:118 , ARG B:182 , ILE B:249 , NAG B:1273 , BMA B:1275 , HOH B:2112 , HOH B:2127 , HOH B:2128 , HOH B:2129
BINDING SITE FOR RESIDUE NAG B1274
12
BC3
SOFTWARE
NAG B:1274
BINDING SITE FOR RESIDUE BMA B1275
13
BC4
SOFTWARE
GLU B:89 , GLN B:102 , ASN B:104 , GLU B:114 , TRP B:179 , BGC B:1277 , XYS B:1279 , HOH B:2130
BINDING SITE FOR RESIDUE BGC B1276
14
BC5
SOFTWARE
GLU B:114 , ARG B:116 , TRP B:179 , BGC B:1276 , BGC B:1278 , XYS B:1279 , XYS B:1280 , GAL B:1281
BINDING SITE FOR RESIDUE BGC B1277
15
BC6
SOFTWARE
TRP B:179 , GLY B:183 , BGC B:1277 , XYS B:1280 , GAL B:1281 , HOH B:2078
BINDING SITE FOR RESIDUE BGC B1278
16
BC7
SOFTWARE
TRP B:174 , ASP B:178 , TRP B:179 , BGC B:1276 , BGC B:1277 , HOH B:2131
BINDING SITE FOR RESIDUE XYS B1279
17
BC8
SOFTWARE
GLU B:114 , ARG B:116 , BGC B:1277 , BGC B:1278 , GAL B:1281 , HOH B:2132 , HOH B:2133
BINDING SITE FOR RESIDUE XYS B1280
18
BC9
SOFTWARE
ASP B:112 , GLU B:114 , ARG B:258 , BGC B:1277 , BGC B:1278 , XYS B:1280 , HOH B:2134
BINDING SITE FOR RESIDUE GAL B1281
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Sorry, no Info available
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1umza_ (A:)
1b: SCOP_d1umzb_ (B:)
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(
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Class
:
All beta proteins
(24004)
Fold
:
Concanavalin A-like lectins/glucanases
(797)
Superfamily
:
Concanavalin A-like lectins/glucanases
(797)
Family
:
Glycosyl hydrolases family 16
(29)
Protein domain
:
Xyloglucan endotransglycosylase
(2)
European aspen (Populus tremula) [TaxId: 113636]
(2)
1a
d1umza_
A:
1b
d1umzb_
B:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1umzB00 (B:9-272)
1b: CATH_1umzA00 (A:6-272)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
[code=2.60.120.200, no name defined]
(421)
European aspen (Populus tremula)
(2)
1a
1umzB00
B:9-272
1b
1umzA00
A:6-272
[
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Glyco_hydro_16_1umzB01 (B:11-192)
1b: PFAM_Glyco_hydro_16_1umzB02 (B:11-192)
2a: PFAM_XET_C_1umzB03 (B:216-266)
2b: PFAM_XET_C_1umzB04 (B:216-266)
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Clans
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(
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Families
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(
)
Organisms
(
)
(
)
Clan
:
Concanavalin
(293)
Family
:
Glyco_hydro_16
(16)
Populus tremula x Populus tremuloides
(2)
1a
Glyco_hydro_16-1umzB01
B:11-192
1b
Glyco_hydro_16-1umzB02
B:11-192
Clan
:
no clan defined [family: XET_C]
(6)
Family
:
XET_C
(6)
Populus tremula x Populus tremuloides
(2)
2a
XET_C-1umzB03
B:216-266
2b
XET_C-1umzB04
B:216-266
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Asym.Unit (107 KB)
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