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1ULV
Biol. Unit 1
Info
Asym.Unit (167 KB)
Biol.Unit 1 (161 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF GLUCODEXTRANASE COMPLEXED WITH ACARBOSE
Authors
:
M. Mizuno, T. Tonozuka, S. Suzuki, R. Uotsu-Tomita, S. Kamitori, A. Nis Y. Sakano
Date
:
16 Sep 03 (Deposition) - 09 Dec 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.42
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Gh Family 15, (Alpha-Alpha)6-Barrel, Slh Domain, Hydrolase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Mizuno, T. Tonozuka, S. Suzuki, R. Uotsu-Tomita, S. Kamitori, A. Nishikawa, Y. Sakano
Structural Insights Into Substrate Specificity And Function Of Glucodextranase
J. Biol. Chem. V. 279 10575 2004
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: ALPHA-ACARBOSE (ACRa)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACR
1
Ligand/Ion
ALPHA-ACARBOSE
2
CA
-1
Ligand/Ion
CALCIUM ION
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA A:307 , TYR A:326 , TRP A:330 , ARG A:332 , ASP A:333 , GLN A:370 , ARG A:428 , TRP A:429 , GLU A:430 , GLU A:431 , ASN A:513 , ARG A:567 , TYR A:573 , TRP A:582 , LEU A:653 , TRP A:655 , HOH A:3042 , HOH A:3274
BINDING SITE FOR RESIDUE ACR A 3000
2
AC2
SOFTWARE
LEU A:139 , THR A:142 , GLY A:144 , ASP A:146 , ASP A:159
BINDING SITE FOR RESIDUE CA A 2001
3
AC3
SOFTWARE
PHE A:358 , GLN A:362 , GLU A:409 , HOH A:3146 , HOH A:3190 , HOH A:3308
BINDING SITE FOR RESIDUE CA A 2002
4
AC4
SOFTWARE
ASP A:136 , PRO A:137 , ASN A:211 , ILE A:212 , HOH A:3037 , HOH A:3041
BINDING SITE FOR RESIDUE CA A 2003
5
AC5
SOFTWARE
VAL A:946 , ALA A:969 , ASP A:980 , ASP A:982 , ASP A:985
BINDING SITE FOR RESIDUE CA A 2004
6
AC6
SOFTWARE
ASP A:782 , PRO A:783 , ASP A:786 , ASP A:807 , LEU A:808 , ASP A:990
BINDING SITE FOR RESIDUE CA A 2005
7
AC7
SOFTWARE
ASP A:782 , ASP A:786 , VAL A:991 , GLN A:999
BINDING SITE FOR RESIDUE CA A 2006
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(4, 4)
Info
All SCOP Domains
1a: SCOP_d1ulva1 (A:274-686)
2a: SCOP_d1ulva3 (A:776-1020)
3a: SCOP_d1ulva2 (A:687-775)
4a: SCOP_d1ulva4 (A:2-273)
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)
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)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
alpha/alpha toroid
(324)
Superfamily
:
Six-hairpin glycosidases
(109)
Family
:
Bacterial glucoamylase C-terminal domain-like
(4)
Protein domain
:
Glucodextranase, domain A
(2)
Arthrobacter globiformis [TaxId: 1665]
(2)
1a
d1ulva1
A:274-686
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
CBD9-like
(9)
Family
:
Glucodextranase, domain C
(2)
Protein domain
:
Glucodextranase, domain C
(2)
Arthrobacter globiformis [TaxId: 1665]
(2)
2a
d1ulva3
A:776-1020
Superfamily
:
E set domains
(509)
Family
:
E-set domains of sugar-utilizing enzymes
(147)
Protein domain
:
Glucodextranase, domain B
(2)
Arthrobacter globiformis [TaxId: 1665]
(2)
3a
d1ulva2
A:687-775
Fold
:
Supersandwich
(271)
Superfamily
:
Galactose mutarotase-like
(205)
Family
:
Bacterial glucoamylase N-terminal domain-like
(4)
Protein domain
:
Glucodextranase, domain N
(2)
Arthrobacter globiformis [TaxId: 1665]
(2)
4a
d1ulva4
A:2-273
[
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CATH Domains
(4, 4)
Info
all CATH domains
1a: CATH_1ulvA02 (A:274-687)
2a: CATH_1ulvA01 (A:2-273)
3a: CATH_1ulvA04 (A:774-938,A:939-1020)
4a: CATH_1ulvA03 (A:688-773)
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)
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)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha/alpha barrel
(251)
Topology
:
Glycosyltransferase
(233)
Homologous Superfamily
:
[code=1.50.10.10, no name defined]
(67)
Arthrobacter globiformis. Organism_taxid: 1665. Strain: i42
(2)
1a
1ulvA02
A:274-687
Class
:
Mainly Beta
(13760)
Architecture
:
Distorted Sandwich
(506)
Topology
:
Beta-galactosidase; Chain A, domain 5
(250)
Homologous Superfamily
:
[code=2.70.98.10, no name defined]
(116)
Arthrobacter globiformis. Organism_taxid: 1665. Strain: i42
(2)
2a
1ulvA01
A:2-273
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.1190, no name defined]
(5)
Arthrobacter globiformis. Organism_taxid: 1665. Strain: i42
(2)
3a
1ulvA04
A:774-938,A:939-1020
Homologous Superfamily
:
E-set domains of sugar-utilizing enzymes; domain 3
(3)
Arthrobacter globiformis. Organism_taxid: 1665. Strain: i42
(2)
4a
1ulvA03
A:688-773
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Pfam Domains
(4, 4)
Info
all PFAM domains
1a: PFAM_Glyco_hydro_15_1ulvA01 (A:281-956)
2a: PFAM_DUF2223_1ulvA02 (A:776-1018)
3a: PFAM_Glucodextran_B_1ulvA03 (A:692-775)
4a: PFAM_Glucodextran_N_1ulvA04 (A:5-271)
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Clans
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)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
6_Hairpin
(120)
Family
:
Glyco_hydro_15
(4)
Arthrobacter globiformis
(2)
1a
Glyco_hydro_15-1ulvA01
A:281-956
Clan
:
no clan defined [family: DUF2223]
(2)
Family
:
DUF2223
(2)
Arthrobacter globiformis
(2)
2a
DUF2223-1ulvA02
A:776-1018
Clan
:
no clan defined [family: Glucodextran_B]
(2)
Family
:
Glucodextran_B
(2)
Arthrobacter globiformis
(2)
3a
Glucodextran_B-1ulvA03
A:692-775
Clan
:
no clan defined [family: Glucodextran_N]
(4)
Family
:
Glucodextran_N
(4)
Arthrobacter globiformis
(2)
4a
Glucodextran_N-1ulvA04
A:5-271
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Chain A
Asymmetric Unit 1
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Asym.Unit (167 KB)
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