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1UKO
Biol. Unit 1
Info
Asym.Unit (349 KB)
Biol.Unit 1 (90 KB)
Biol.Unit 2 (91 KB)
Biol.Unit 3 (90 KB)
Biol.Unit 4 (89 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF SOYBEAN BETA-AMYLASE MUTANT SUBSTITUTED AT SURFACE REGION
Authors
:
Y. N. Kang, M. Adachi, B. Mikami, S. Utsumi
Date
:
30 Aug 03 (Deposition) - 10 Feb 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
(Alpha/Beta)8 Barrel, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. N. Kang, M. Adachi, B. Mikami, S. Utsumi
Change In The Crystal Packing Of Soybean Beta-Amylase Mutants Substituted At A Few Surface Amino Acid Residues
Protein Eng. V. 16 809 2003
(for further references see the
PDB file header
)
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Hetero Components
(1, 6)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
1e: SULFATE ION (SO4e)
1f: SULFATE ION (SO4f)
1g: SULFATE ION (SO4g)
1h: SULFATE ION (SO4h)
1i: SULFATE ION (SO4i)
1j: SULFATE ION (SO4j)
1k: SULFATE ION (SO4k)
1l: SULFATE ION (SO4l)
1m: SULFATE ION (SO4m)
1n: SULFATE ION (SO4n)
1o: SULFATE ION (SO4o)
1p: SULFATE ION (SO4p)
1q: SULFATE ION (SO4q)
1r: SULFATE ION (SO4r)
1s: SULFATE ION (SO4s)
1t: SULFATE ION (SO4t)
1u: SULFATE ION (SO4u)
1v: SULFATE ION (SO4v)
1w: SULFATE ION (SO4w)
1x: SULFATE ION (SO4x)
View:
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Label:
No.
Name
Count
Type
Full Name
1
SO4
6
Ligand/Ion
SULFATE ION
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: BC8 (SOFTWARE)
6: CC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:67 , SER A:160 , ASN A:164 , HOH A:1773
BINDING SITE FOR RESIDUE SO4 A 3000
2
AC2
SOFTWARE
ARG A:347 , SER A:349 , HOH A:701 , HOH A:1822
BINDING SITE FOR RESIDUE SO4 A 3001
3
AC3
SOFTWARE
HIS A:336 , ARG A:376 , HOH A:1871
BINDING SITE FOR RESIDUE SO4 A 3002
4
AC4
SOFTWARE
LYS A:291 , ARG A:376 , PHE A:414 , ASN A:455 , HIS A:456 , ALA A:457
BINDING SITE FOR RESIDUE SO4 A 3003
5
BC8
SOFTWARE
ARG A:70
BINDING SITE FOR RESIDUE SO4 A 3016
6
CC3
SOFTWARE
ASN A:98 , PRO A:193 , GLN A:194 , HOH A:675 , HOH A:1794 , HOH A:1855
BINDING SITE FOR RESIDUE SO4 A 3020
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: BETA_AMYLASE_1 (A:93-101)
2: BETA_AMYLASE_2 (A:182-192)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BETA_AMYLASE_1
PS00506
Beta-amylase active site 1.
AMYB_SOYBN
94-102
1
A:93-101
-
-
-
2
BETA_AMYLASE_2
PS00679
Beta-amylase active site 2.
AMYB_SOYBN
183-193
1
A:182-192
-
-
-
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1ukoa_ (A:)
1b: SCOP_d1ukob_ (B:)
1c: SCOP_d1ukoc_ (C:)
1d: SCOP_d1ukod_ (D:)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
Amylase, catalytic domain
(385)
Protein domain
:
beta-Amylase
(20)
Soybean (Glycine max) [TaxId: 3847]
(18)
1a
d1ukoa_
A:
1b
d1ukob_
B:
1c
d1ukoc_
C:
1d
d1ukod_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1ukoA00 (A:6-495)
1b: CATH_1ukoB00 (B:6-495)
1c: CATH_1ukoC00 (C:6-495)
1d: CATH_1ukoD00 (D:6-495)
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Glycosidases
(843)
Soybean (Glycine max)
(20)
1a
1ukoA00
A:6-495
1b
1ukoB00
B:6-495
1c
1ukoC00
C:6-495
1d
1ukoD00
D:6-495
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Glyco_hydro_14_1ukoD01 (D:15-437)
1b: PFAM_Glyco_hydro_14_1ukoD02 (D:15-437)
1c: PFAM_Glyco_hydro_14_1ukoD03 (D:15-437)
1d: PFAM_Glyco_hydro_14_1ukoD04 (D:15-437)
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Clan
:
Glyco_hydro_tim
(488)
Family
:
Glyco_hydro_14
(16)
Glycine max (Soybean) (Glycine hispida)
(12)
1a
Glyco_hydro_14-1ukoD01
D:15-437
1b
Glyco_hydro_14-1ukoD02
D:15-437
1c
Glyco_hydro_14-1ukoD03
D:15-437
1d
Glyco_hydro_14-1ukoD04
D:15-437
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (349 KB)
Header - Asym.Unit
Biol.Unit 1 (90 KB)
Header - Biol.Unit 1
Biol.Unit 2 (91 KB)
Header - Biol.Unit 2
Biol.Unit 3 (90 KB)
Header - Biol.Unit 3
Biol.Unit 4 (89 KB)
Header - Biol.Unit 4
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