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1UJW
Asym. Unit
Info
Asym.Unit (124 KB)
Biol.Unit 1 (116 KB)
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(1)
Title
:
STRUCTURE OF THE COMPLEX BETWEEN BTUB AND COLICIN E3 RECEPTOR BINDING DOMAIN
Authors
:
G. Kurisu, S. D. Zakharov, M. V. Zhalnina, S. Bano, V. Y. Eroukova, T. I. Rokitskaya, Y. N. Antonenko, M. C. Wiener, W. A. Cramer
Date
:
12 Aug 03 (Deposition) - 25 Nov 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.75
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Beta-Barrel, Coiled-Coil, Transport Protein-Hydrolase Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Kurisu, S. D. Zakharov, M. V. Zhalnina, S. Bano, V. Y. Eroukova, T. I. Rokitskaya, Y. N. Antonenko, M. C. Wiener, W. A. Cramer
The Structure Of Btub With Bound Colicin E3 R-Domain Implie A Translocon
Nat. Struct. Biol. V. 10 948 2003
[
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Hetero Components
(5, 20)
Info
All Hetero Components
1a: ACETOACETIC ACID (AAEa)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
3a: GLUCOSAMINE 1-PHOSPHATE (GP1a)
3b: GLUCOSAMINE 1-PHOSPHATE (GP1b)
4a: LAURYL DIMETHYLAMINE-N-OXIDE (LDAa)
4b: LAURYL DIMETHYLAMINE-N-OXIDE (LDAb)
4c: LAURYL DIMETHYLAMINE-N-OXIDE (LDAc)
4d: LAURYL DIMETHYLAMINE-N-OXIDE (LDAd)
4e: LAURYL DIMETHYLAMINE-N-OXIDE (LDAe)
4f: LAURYL DIMETHYLAMINE-N-OXIDE (LDAf)
4g: LAURYL DIMETHYLAMINE-N-OXIDE (LDAg)
5a: 3-OXO-PENTADECANOIC ACID (LIMa)
5b: 3-OXO-PENTADECANOIC ACID (LIMb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AAE
1
Ligand/Ion
ACETOACETIC ACID
2
GOL
8
Ligand/Ion
GLYCEROL
3
GP1
2
Ligand/Ion
GLUCOSAMINE 1-PHOSPHATE
4
LDA
7
Ligand/Ion
LAURYL DIMETHYLAMINE-N-OXIDE
5
LIM
2
Ligand/Ion
3-OXO-PENTADECANOIC ACID
[
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]
Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TRP A:317 , ARG A:336 , ASN A:337 , THR A:338 , ASP A:361 , AAE A:802 , LIM A:803
BINDING SITE FOR RESIDUE GP1 A 801
02
AC2
SOFTWARE
SER A:146 , ASN A:147 , SER A:148 , LIM A:812
BINDING SITE FOR RESIDUE GP1 A 811
03
AC3
SOFTWARE
TRP A:144 , GLY A:145 , VAL A:551 , GLY A:563 , LEU A:588 , GP1 A:811
BINDING SITE FOR RESIDUE LIM A 812
04
AC4
SOFTWARE
GLY A:204 , ALA A:205 , VAL A:218 , TRP A:250 , TYR A:269 , LDA A:605
BINDING SITE FOR RESIDUE LDA A 601
05
AC5
SOFTWARE
GLY A:204 , GLY A:220 , GLN A:248 , ASN A:302 , LDA A:603
BINDING SITE FOR RESIDUE LDA A 602
06
AC6
SOFTWARE
TYR A:152 , VAL A:154 , LYS A:200 , THR A:201 , GLY A:222 , TYR A:223 , ASP A:224 , ILE A:261 , LDA A:602 , LDA A:607
BINDING SITE FOR RESIDUE LDA A 603
07
AC7
SOFTWARE
THR A:156 , GLN A:158 , ASN A:302 , ALA A:313 , VAL A:315 , ASP A:361 , LDA A:606
BINDING SITE FOR RESIDUE LDA A 604
08
AC8
SOFTWARE
TRP A:250 , GLY A:344 , GLY A:355 , LDA A:601
BINDING SITE FOR RESIDUE LDA A 605
09
AC9
SOFTWARE
TYR A:172 , TYR A:256 , SER A:263 , ASN A:302 , LDA A:604 , LDA A:607
BINDING SITE FOR RESIDUE LDA A 606
10
BC1
SOFTWARE
TYR A:152 , TYR A:172 , SER A:263 , LDA A:603 , LDA A:606
BINDING SITE FOR RESIDUE LDA A 607
11
BC2
SOFTWARE
ARG A:336 , GP1 A:801
BINDING SITE FOR RESIDUE AAE A 802
12
BC3
SOFTWARE
TRP A:300 , THR A:338 , PHE A:594 , GP1 A:801
BINDING SITE FOR RESIDUE LIM A 803
13
BC4
SOFTWARE
ASN A:72 , ALA A:73 , SER A:74
BINDING SITE FOR RESIDUE GOL A 701
14
BC5
SOFTWARE
LEU A:103 , GLN A:105 , THR A:131 , SER A:155 , TYR A:203
BINDING SITE FOR RESIDUE GOL A 702
15
BC6
SOFTWARE
THR A:7 , ARG A:106
BINDING SITE FOR RESIDUE GOL A 703
16
BC7
SOFTWARE
TYR A:256 , GLY A:258 , GLU A:259 , LEU A:260
BINDING SITE FOR RESIDUE GOL A 704
17
BC8
SOFTWARE
LYS A:273 , TYR A:275
BINDING SITE FOR RESIDUE GOL A 705
18
BC9
SOFTWARE
ARG A:367 , GLY A:369
BINDING SITE FOR RESIDUE GOL A 706
19
CC1
SOFTWARE
SER A:545 , LYS A:571
BINDING SITE FOR RESIDUE GOL A 707
20
CC2
SOFTWARE
THR A:556 , HIS A:558 , TYR A:592
BINDING SITE FOR RESIDUE GOL A 708
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: TONB_DEPENDENT_REC_2 (A:577-594)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TONB_DEPENDENT_REC_2
PS01156
TonB-dependent receptor proteins signature 2.
BTUB_ECOLI
597-614
1
A:577-594
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1ujwb_ (B:)
2a: SCOP_d1ujwa_ (A:)
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(
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Coiled coil proteins
(689)
Fold
:
Antiparallel coiled-coil
(45)
Superfamily
:
Colicin E3 receptor domain
(4)
Family
:
Colicin E3 receptor domain
(4)
Protein domain
:
Colicin E3 receptor domain
(4)
Escherichia coli [TaxId: 562]
(4)
1a
d1ujwb_
B:
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Transmembrane beta-barrels
(143)
Superfamily
:
Porins
(99)
Family
:
Ligand-gated protein channel
(29)
Protein domain
:
Outer membrane cobalamin transporter BtuB
(12)
Escherichia coli [TaxId: 562]
(12)
2a
d1ujwa_
A:
[
close SCOP info
]
CATH Domains
(3, 3)
Info
all CATH domains
1a: CATH_1ujwB00 (B:323-438)
2a: CATH_1ujwA02 (A:131-594)
3a: CATH_1ujwA01 (A:7-130)
View:
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(
)
(
)
Architectures
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Helix Hairpins
(718)
Homologous Superfamily
:
Helix Hairpins
(4)
Escherichia coli. Organism_taxid: 562.
(2)
1a
1ujwB00
B:323-438
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Maltoporin; Chain A
(39)
Homologous Superfamily
:
[code=2.40.170.20, no name defined]
(28)
Escherichia coli. Organism_taxid: 562.
(3)
2a
1ujwA02
A:131-594
Architecture
:
Beta Complex
(381)
Topology
:
Ferric Hydroxamate Uptake Protein; Chain A, domain 1
(37)
Homologous Superfamily
:
Ferric Hydroxamate Uptake Protein; Chain A, domain 1
(36)
Escherichia coli. Organism_taxid: 562.
(3)
3a
1ujwA01
A:7-130
[
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Pfam Domains
(3, 3)
Info
all PFAM domains
1a: PFAM_TonB_dep_Rec_1ujwA01 (A:370-593)
2a: PFAM_Plug_1ujwA02 (A:18-126)
3a: PFAM_E2R135_1ujwB01 (B:323-438)
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Clans
(
)
(
)
Families
(
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(
)
Organisms
(
)
(
)
Clan
:
MBB
(97)
Family
:
TonB_dep_Rec
(26)
Escherichia coli (strain K12)
(16)
1a
TonB_dep_Rec-1ujwA01
A:370-593
Clan
:
Ubiquitin
(279)
Family
:
Plug
(26)
Escherichia coli (strain K12)
(16)
2a
Plug-1ujwA02
A:18-126
Clan
:
no clan defined [family: E2R135]
(3)
Family
:
E2R135
(3)
Escherichia coli
(3)
3a
E2R135-1ujwB01
B:323-438
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]
Atom Selection
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Asymmetric Unit 1
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