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1UJJ
Asym. Unit
Info
Asym.Unit (51 KB)
Biol.Unit 1 (25 KB)
Biol.Unit 2 (24 KB)
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(1)
Title
:
VHS DOMAIN OF HUMAN GGA1 COMPLEXED WITH C-TERMINAL PEPTIDE FROM BACE
Authors
:
T. Shiba, S. Kametaka, M. Kawasaki, M. Shibata, S. Waguri, Y. Uchiyama, S. Wakatsuki
Date
:
05 Aug 03 (Deposition) - 11 May 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B (1x)
Keywords
:
Protein-Peptide Complex, Protein Transport, Adaptor Protein, Protein Transport/Hydrolase Complex
(Keyword Search:
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)
Reference
:
T. Shiba, S. Kametaka, M. Kawasaki, M. Shibata, S. Waguri, Y. Uchiyama, S. Wakatsuki
Insights Into The Phosphoregulation Of Beta-Secretase Sorting Signal By The Vhs Domain Of Gga1
Traffic V. 5 437 2004
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
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Sorry, no Info available
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: VHS (A:17-146,B:17-146)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
VHS
PS50179
VHS domain profile.
GGA1_HUMAN
17-147
2
A:17-146
B:17-146
[
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Exons
(7, 13)
Info
All Exons
Exon 1.10f (C:6-12)
Exon 2.1a (A:7-15 | B:7-15)
Exon 2.7c (A:15-43 | B:15-43)
Exon 2.8a (A:43-68 | B:43-68)
Exon 2.9c (A:69-101 | B:69-101)
Exon 2.10f (A:102-143 | B:102-143)
Exon 2.11b (A:143-146 | B:143-146)
View:
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All Exon Boundaries
1: Boundary 1.9d/1.10f
2: Boundary 1.10f/-
3: Boundary -/2.1a
4: Boundary 2.1a/2.7c
5: Boundary 2.7c/2.8a
6: Boundary 2.8a/2.9c
7: Boundary 2.9c/2.10f
8: Boundary 2.10f/2.11b
9: Boundary 2.11b/2.12c
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000313005
1b
ENSE00002169377
chr11:
117186972-117186251
722
BACE1_HUMAN
1-87
87
0
-
-
1.2d
ENST00000313005
2d
ENSE00001779698
chr11:
117167677-117167589
89
BACE1_HUMAN
88-117
30
0
-
-
1.4c
ENST00000313005
4c
ENSE00001602221
chr11:
117166063-117165847
217
BACE1_HUMAN
117-189
73
0
-
-
1.5b
ENST00000313005
5b
ENSE00001732292
chr11:
117164724-117164587
138
BACE1_HUMAN
190-235
46
0
-
-
1.6b
ENST00000313005
6b
ENSE00001231658
chr11:
117163904-117163770
135
BACE1_HUMAN
236-280
45
0
-
-
1.7c
ENST00000313005
7c
ENSE00001053358
chr11:
117162529-117162428
102
BACE1_HUMAN
281-314
34
0
-
-
1.8b
ENST00000313005
8b
ENSE00001053366
chr11:
117161765-117161616
150
BACE1_HUMAN
315-364
50
0
-
-
1.9d
ENST00000313005
9d
ENSE00001385289
chr11:
117161375-117161204
172
BACE1_HUMAN
365-422
58
0
-
-
1.10f
ENST00000313005
10f
ENSE00002041784
chr11:
117160523-117156402
4122
BACE1_HUMAN
422-501
80
1
C:6-12
7
2.1a
ENST00000343632
1a
ENSE00001813421
chr22:
38004482-38004910
429
GGA1_HUMAN
1-15
15
2
A:7-15
B:7-15
9
9
2.7c
ENST00000343632
7c
ENSE00002140158
chr22:
38010197-38010281
85
GGA1_HUMAN
15-43
29
2
A:15-43
B:15-43
29
29
2.8a
ENST00000343632
8a
ENSE00001612880
chr22:
38012929-38013004
76
GGA1_HUMAN
43-68
26
2
A:43-68
B:43-68
26
26
2.9c
ENST00000343632
9c
ENSE00001683976
chr22:
38014455-38014553
99
GGA1_HUMAN
69-101
33
2
A:69-101
B:69-101
33
33
2.10f
ENST00000343632
10f
ENSE00000880168
chr22:
38016245-38016368
124
GGA1_HUMAN
102-143
42
2
A:102-143
B:102-143
42
42
2.11b
ENST00000343632
11b
ENSE00000880169
chr22:
38016820-38016920
101
GGA1_HUMAN
143-176
34
2
A:143-146
B:143-146
4
4
2.12c
ENST00000343632
12c
ENSE00000653934
chr22:
38017623-38017703
81
GGA1_HUMAN
177-203
27
0
-
-
2.13
ENST00000343632
13
ENSE00000880172
chr22:
38019334-38019474
141
GGA1_HUMAN
204-250
47
0
-
-
2.14b
ENST00000343632
14b
ENSE00000880174
chr22:
38019559-38019640
82
GGA1_HUMAN
251-278
28
0
-
-
2.14e
ENST00000343632
14e
ENSE00001286815
chr22:
38020976-38021083
108
GGA1_HUMAN
278-314
37
0
-
-
2.15a
ENST00000343632
15a
ENSE00000653938
chr22:
38021804-38021956
153
GGA1_HUMAN
314-365
52
0
-
-
2.16
ENST00000343632
16
ENSE00000653944
chr22:
38025469-38025533
65
GGA1_HUMAN
365-386
22
0
-
-
2.17a
ENST00000343632
17a
ENSE00000653945
chr22:
38026005-38026177
173
GGA1_HUMAN
387-444
58
0
-
-
2.18b
ENST00000343632
18b
ENSE00000653946
chr22:
38026910-38027106
197
GGA1_HUMAN
444-510
67
0
-
-
2.19
ENST00000343632
19
ENSE00000653947
chr22:
38028003-38028172
170
GGA1_HUMAN
510-566
57
0
-
-
2.20
ENST00000343632
20
ENSE00000653948
chr22:
38028412-38028522
111
GGA1_HUMAN
567-603
37
0
-
-
2.21d
ENST00000343632
21d
ENSE00001823052
chr22:
38028608-38029571
964
GGA1_HUMAN
604-639
36
0
-
-
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1ujja_ (A:)
1b: SCOP_d1ujjb_ (B:)
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Class
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All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
ENTH/VHS domain
(36)
Family
:
VHS domain
(16)
Protein domain
:
ADP-ribosylation factor binding protein Gga1
(5)
Human (Homo sapiens) [TaxId: 9606]
(5)
1a
d1ujja_
A:
1b
d1ujjb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1ujjA00 (A:7-146)
1b: CATH_1ujjB00 (B:7-146)
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Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha Horseshoe
(399)
Topology
:
Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
(320)
Homologous Superfamily
:
[code=1.25.40.90, no name defined]
(33)
Human (Homo sapiens)
(20)
1a
1ujjA00
A:7-146
1b
1ujjB00
B:7-146
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_VHS_1ujjB01 (B:7-143)
1b: PFAM_VHS_1ujjB02 (B:7-143)
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Clan
:
ENTH_VHS
(15)
Family
:
VHS
(11)
Homo sapiens (Human)
(11)
1a
VHS-1ujjB01
B:7-143
1b
VHS-1ujjB02
B:7-143
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