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1UJ3
Asym. Unit
Info
Asym.Unit (115 KB)
Biol.Unit 1 (111 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A HUMANIZED FAB FRAGMENT OF ANTI-TISSUE-FACTOR ANTIBODY IN COMPLEX WITH TISSUE FACTOR
Authors
:
U. Ohto, R. Mizutani, M. Nakamura, H. Adachi, Y. Satow
Date
:
25 Jul 03 (Deposition) - 25 Jul 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Tissue Factor, Antigen, Antibody, Fab, Immune System/Blood Clotting Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
U. Ohto, R. Mizutani, M. Nakamura, H. Adachi, Y. Satow
Crystal Structure Of A Humanized Fab Fragment Of Anti-Tissue-Factor Antibody In Complex With Tissue Factor.
J. Synchrotron Radiat. V. 11 105 2004
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_014299 (I713V, chain C, )
2: VAR_012008 (R731W, chain C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_014299
I
145
V
TF_HUMAN
Polymorphism
3917627
C
I
713
V
2
UniProt
VAR_012008
R
163
W
TF_HUMAN
Polymorphism
5901
C
R
731
W
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: TISSUE_FACTOR (C:645-662)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TISSUE_FACTOR
PS00621
Tissue factor signature.
TF_HUMAN
77-94
1
C:645-662
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Exons
(4, 4)
Info
All Exons
Exon 1.3 (C:606-639)
Exon 1.4 (C:639-706)
Exon 1.5b (C:706-765)
Exon 1.6 (C:766-810)
View:
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All Exon Boundaries
1: Boundary 1.1a/1.3
2: Boundary 1.3/1.4
3: Boundary 1.4/1.5b
4: Boundary 1.5b/1.6
5: Boundary 1.6/1.7b
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000334047
1a
ENSE00001452073
chr1:
95007356-95007093
264
TF_HUMAN
1-34
34
0
-
-
1.3
ENST00000334047
3
ENSE00000777349
chr1:
95005924-95005813
112
TF_HUMAN
34-71
38
1
C:606-639
34
1.4
ENST00000334047
4
ENSE00001329748
chr1:
95001720-95001521
200
TF_HUMAN
71-138
68
1
C:639-706
68
1.5b
ENST00000334047
5b
ENSE00000777351
chr1:
94998824-94998646
179
TF_HUMAN
138-197
60
1
C:706-765
60
1.6
ENST00000334047
6
ENSE00000777352
chr1:
94998036-94997877
160
TF_HUMAN
198-251
54
1
C:766-810
45
1.7b
ENST00000334047
7b
ENSE00001906129
chr1:
94996152-94994781
1372
TF_HUMAN
251-295
45
0
-
-
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SCOP Domains
(5, 6)
Info
All SCOP Domains
1a: SCOP_d1uj3c1 (C:606-706)
1b: SCOP_d1uj3c2 (C:707-810)
2a: SCOP_d1uj3b2 (B:418-517)
3a: SCOP_d1uj3a2 (A:108-214)
4a: SCOP_d1uj3b1 (B:301-417)
5a: SCOP_d1uj3a1 (A:1-107)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Fibronectin type III
(212)
Family
:
Fibronectin type III
(180)
Protein domain
:
Extracellular region of human tissue factor
(33)
Human (Homo sapiens) [TaxId: 9606]
(32)
1a
d1uj3c1
C:606-706
1b
d1uj3c2
C:707-810
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
(608)
Human (Homo sapiens) [TaxId: 9606]
(179)
2a
d1uj3b2
B:418-517
Protein domain
:
Immunoglobulin light chain kappa constant domain, CL-kappa
(495)
Human (Homo sapiens) [TaxId: 9606]
(144)
3a
d1uj3a2
A:108-214
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
Immunoglobulin heavy chain variable domain, VH
(658)
Engineered (including hybrid species)
(68)
4a
d1uj3b1
B:301-417
Protein domain
:
Immunoglobulin light chain kappa variable domain, VL-kappa
(616)
Engineered (including hybrid species)
(61)
5a
d1uj3a1
A:1-107
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1uj3A02 (A:109-211)
1b: CATH_1uj3B02 (B:418-517)
1c: CATH_1uj3C01 (C:606-705)
1d: CATH_1uj3C02 (C:706-810)
1e: CATH_1uj3B01 (B:301-417)
1f: CATH_1uj3A01 (A:1-108)
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)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
1a
1uj3A02
A:109-211
1b
1uj3B02
B:418-517
1c
1uj3C01
C:606-705
1d
1uj3C02
C:706-810
1e
1uj3B01
B:301-417
1f
1uj3A01
A:1-108
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Interfer_bind_1uj3C01 (C:706-810)
2a: PFAM_Tissue_fac_1uj3C02 (C:606-686)
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Clan
:
E-set
(290)
Family
:
Interfer-bind
(18)
Homo sapiens (Human)
(18)
1a
Interfer-bind-1uj3C01
C:706-810
Family
:
Tissue_fac
(23)
Homo sapiens (Human)
(23)
2a
Tissue_fac-1uj3C02
C:606-686
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Asym.Unit (115 KB)
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