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1UGN
Asym. Unit
Info
Asym.Unit (38 KB)
Biol.Unit 1 (35 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF LIR1.02, ONE OF THE ALLELES OF LIR1
Authors
:
M. Shiroishi, L. Rasubala, K. Kuroki, K. Amano, N. Tsuchiya, K. Tokunaga, D. Kohda, K. Maenaka
Date
:
17 Jun 03 (Deposition) - 10 Aug 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Immunoglobulin-Like Folds, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Kuroki, N. Tsuchiya, M. Shiroishi, L. Rasubala, Y. Yamashita, K. Matsuta, T. Fukazawa, M. Kusaoi, Y. Murakami, M. Takiguchi, T. Juji, H. Hashimoto, D. Kohda, K. Maenaka, K. Tokunaga
Extensive Polymorphisms Of Lilrb1 (Ilt2, Lir1) And Their Association With Hla-Drb1 Shared Epitope Negative Rheumatoid Arthritis.
Hum. Mol. Genet. V. 14 2469 2005
(for further references see the
PDB file header
)
[
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
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Label:
Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
[
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]
SAPs(SNPs)/Variants
(4, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_016993 (P45P, chain A, )
2: VAR_049888 (T70T, chain A, )
3: VAR_016994 (T119T, chain A, )
4: VAR_016995 (I132I, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_016993
L
68
P
LIRB1_HUMAN
Polymorphism
1061679
A
P
45
P
2
UniProt
VAR_049888
A
93
T
LIRB1_HUMAN
Polymorphism
12460501
A
T
70
T
3
UniProt
VAR_016994
I
142
T
LIRB1_HUMAN
Polymorphism
1061680
A
T
119
T
4
UniProt
VAR_016995
S
155
I
LIRB1_HUMAN
Polymorphism
1061681
A
I
132
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
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Exons
(4, 4)
Info
All Exons
Exon 1.5b (A:1-1)
Exon 1.6 (A:1-97)
Exon 1.7b (A:97-198 (gaps))
Exon 1.8 (A:198-198)
View:
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All Exon Boundaries
1: Boundary 1.4f/1.5b
2: Boundary 1.5b/1.6
3: Boundary 1.6/1.7b
4: Boundary 1.7b/1.8
5: Boundary 1.8/1.9a
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3
ENST00000396331
3
ENSE00001524582
chr19:
55128612-55128803
192
LIRB1_HUMAN
-
0
0
-
-
1.4d
ENST00000396331
4d
ENSE00001524607
chr19:
55141968-55142084
117
LIRB1_HUMAN
-
0
0
-
-
1.4f
ENST00000396331
4f
ENSE00001772529
chr19:
55142477-55142558
82
LIRB1_HUMAN
1-12
12
0
-
-
1.5b
ENST00000396331
5b
ENSE00001770130
chr19:
55142722-55142757
36
LIRB1_HUMAN
12-24
13
1
A:1-1
1
1.6
ENST00000396331
6
ENSE00001739075
chr19:
55142951-55143238
288
LIRB1_HUMAN
24-120
97
1
A:1-97
97
1.7b
ENST00000396331
7b
ENSE00001642167
chr19:
55143386-55143688
303
LIRB1_HUMAN
120-221
102
1
A:97-198 (gaps)
102
1.8
ENST00000396331
8
ENSE00001697649
chr19:
55143915-55144211
297
LIRB1_HUMAN
221-320
100
1
A:198-198
1
1.9a
ENST00000396331
9a
ENSE00001653351
chr19:
55144467-55144769
303
LIRB1_HUMAN
320-421
102
0
-
-
1.10
ENST00000396331
10
ENSE00000726302
chr19:
55145089-55145139
51
LIRB1_HUMAN
421-438
18
0
-
-
1.11c
ENST00000396331
11c
ENSE00001653883
chr19:
55145425-55145472
48
LIRB1_HUMAN
438-454
17
0
-
-
1.12d
ENST00000396331
12d
ENSE00001626275
chr19:
55146092-55146214
123
LIRB1_HUMAN
454-495
42
0
-
-
1.13b
ENST00000396331
13b
ENSE00001769852
chr19:
55146555-55146630
76
LIRB1_HUMAN
495-520
26
0
-
-
1.14
ENST00000396331
14
ENSE00001684637
chr19:
55146710-55146747
38
LIRB1_HUMAN
520-533
14
0
-
-
1.15a
ENST00000396331
15a
ENSE00001649211
chr19:
55147008-55147060
53
LIRB1_HUMAN
533-550
18
0
-
-
1.15f
ENST00000396331
15f
ENSE00001802166
chr19:
55147948-55148103
156
LIRB1_HUMAN
551-602
52
0
-
-
1.16d
ENST00000396331
16d
ENSE00001266337
chr19:
55148183-55148979
797
LIRB1_HUMAN
603-650
48
0
-
-
[
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]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1ugna1 (A:2-97)
1b: SCOP_d1ugna2 (A:98-195)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
I set domains
(152)
Protein domain
:
Ligand binding domain of lir-1 (ilt2)
(5)
Human (Homo sapiens) [TaxId: 9606]
(5)
1a
d1ugna1
A:2-97
1b
d1ugna2
A:98-195
[
close SCOP info
]
CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1ugnA02 (A:97-198)
1b: CATH_1ugnA01 (A:2-96)
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Classes
(
)
(
)
Architectures
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Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
1a
1ugnA02
A:97-198
1b
1ugnA01
A:2-96
[
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]
Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Ig_2_1ugnA01 (A:5-95)
2a: PFAM_Ig_3_1ugnA02 (A:101-180)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Ig
(577)
Family
:
Ig_2
(52)
Homo sapiens (Human)
(39)
1a
Ig_2-1ugnA01
A:5-95
Family
:
Ig_3
(11)
Homo sapiens (Human)
(9)
2a
Ig_3-1ugnA02
A:101-180
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Chain A
Asymmetric Unit 1
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Asym.Unit (38 KB)
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