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1UGI
Asym. Unit
Info
Asym.Unit (129 KB)
Biol.Unit 1 (19 KB)
Biol.Unit 2 (19 KB)
Biol.Unit 3 (19 KB)
Biol.Unit 4 (19 KB)
Biol.Unit 5 (19 KB)
Biol.Unit 6 (19 KB)
Biol.Unit 7 (18 KB)
Biol.Unit 8 (19 KB)
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(1)
Title
:
URACIL-DNA GLYCOSYLASE INHIBITOR PROTEIN
Authors
:
C. D. Putnam, A. S. Arvai, C. D. Mol, J. A. Tainer
Date
:
04 Nov 98 (Deposition) - 25 Mar 99 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.55
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Biol. Unit 7: G (1x)
Biol. Unit 8: H (1x)
Keywords
:
Protein Mimicry Of Dna, Protein Inhibitor, Hydrolase Inhibitor
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. D. Putnam, M. J. Shroyer, A. J. Lundquist, C. D. Mol, A. S. Arvai, D. W. Mosbaugh, J. A. Tainer
Protein Mimicry Of Dna From Crystal Structures Of The Uracil-Dna Glycosylase Inhibitor Protein And Its Complex With Escherichia Coli Uracil-Dna Glycosylase
J. Mol. Biol. V. 287 331 1999
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 24)
Info
All Hetero Components
1a: IMIDAZOLE (IMDa)
1b: IMIDAZOLE (IMDb)
1c: IMIDAZOLE (IMDc)
1d: IMIDAZOLE (IMDd)
1e: IMIDAZOLE (IMDe)
1f: IMIDAZOLE (IMDf)
1g: IMIDAZOLE (IMDg)
1h: IMIDAZOLE (IMDh)
1i: IMIDAZOLE (IMDi)
1j: IMIDAZOLE (IMDj)
1k: IMIDAZOLE (IMDk)
1l: IMIDAZOLE (IMDl)
1m: IMIDAZOLE (IMDm)
1n: IMIDAZOLE (IMDn)
1o: IMIDAZOLE (IMDo)
1p: IMIDAZOLE (IMDp)
1q: IMIDAZOLE (IMDq)
1r: IMIDAZOLE (IMDr)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
IMD
18
Ligand/Ion
IMIDAZOLE
2
SO4
6
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:34 , ASN A:35 , LYS A:36 , HOH A:2004 , HOH A:2554
BINDING SITE FOR RESIDUE SO4 A 1100
02
AC2
SOFTWARE
GLY E:34 , ASN E:35 , LYS E:36 , HOH E:2318 , HOH E:2361 , HOH E:2462
BINDING SITE FOR RESIDUE SO4 E 1101
03
AC3
SOFTWARE
ASN G:35 , LYS G:36 , HOH G:2360 , HOH G:2523
BINDING SITE FOR RESIDUE SO4 G 1102
04
AC4
SOFTWARE
ASN C:35 , LYS C:36 , HOH C:2520
BINDING SITE FOR RESIDUE SO4 C 1103
05
AC5
SOFTWARE
SER D:21 , TYR D:65 , IMD D:1004 , HOH D:2021
BINDING SITE FOR RESIDUE SO4 D 1104
06
AC6
SOFTWARE
MET E:24 , VAL E:43 , MET E:56
BINDING SITE FOR RESIDUE SO4 E 1105
07
AC7
SOFTWARE
GLY E:77 , ASN E:79 , GLU F:78 , LEU G:23 , LEU G:25 , GLU G:28 , IMD G:1016
BINDING SITE FOR RESIDUE IMD E 1000
08
AC8
SOFTWARE
LYS E:82 , MET E:83 , HOH E:2127 , ILE F:33 , ASN F:35 , ILE F:81
BINDING SITE FOR RESIDUE IMD E 1001
09
AC9
SOFTWARE
LEU E:23 , LEU E:25 , GLU E:28 , GLN G:73 , GLY G:77 , ASN G:79 , GLU H:78
BINDING SITE FOR RESIDUE IMD E 1002
10
BC1
SOFTWARE
SER F:21 , LEU F:42 , GLN H:73 , ASP H:74 , SER H:75 , GLY H:77 , HOH H:2200 , HOH H:2392
BINDING SITE FOR RESIDUE IMD F 1003
11
BC2
SOFTWARE
GLN B:73 , ASP B:74 , SER B:75 , HOH B:2042 , SER D:21 , LEU D:42 , SO4 D:1104 , HOH D:2383
BINDING SITE FOR RESIDUE IMD D 1004
12
BC3
SOFTWARE
ILE C:33 , ILE D:72 , GLU D:78 , LYS D:80 , HOH D:2260
BINDING SITE FOR RESIDUE IMD D 1005
13
BC4
SOFTWARE
LEU A:23 , GLU A:28 , GLY C:77 , ASN C:79 , GLU D:78
BINDING SITE FOR RESIDUE IMD C 1006
14
BC5
SOFTWARE
ILE A:33 , ILE B:72 , ASP B:74 , GLU B:78 , LYS B:80 , HOH B:2267 , HOH B:2326
BINDING SITE FOR RESIDUE IMD B 1007
15
BC6
SOFTWARE
GLY A:77 , ASN A:79 , GLU B:78 , LEU C:25 , GLU C:28
BINDING SITE FOR RESIDUE IMD B 1008
16
BC7
SOFTWARE
GLN A:73 , ASP A:74 , SER A:75 , GLY A:77 , SER C:21 , LEU C:42
BINDING SITE FOR RESIDUE IMD C 1009
17
BC8
SOFTWARE
SER B:21 , GLN D:73 , ASP D:74 , SER D:75
BINDING SITE FOR RESIDUE IMD D 1010
18
BC9
SOFTWARE
GLN F:73 , GLY F:77 , SER H:21 , LEU H:42
BINDING SITE FOR RESIDUE IMD H 1011
19
CC1
SOFTWARE
ILE G:33 , GLU H:53 , ILE H:72 , GLU H:78 , LYS H:80
BINDING SITE FOR RESIDUE IMD H 1012
20
CC2
SOFTWARE
SER E:21 , LEU E:42 , HOH E:2086 , GLN G:73 , SER G:75
BINDING SITE FOR RESIDUE IMD E 1013
21
CC3
SOFTWARE
ILE E:33 , ILE F:72 , ASP F:74 , GLU F:78 , LYS F:80
BINDING SITE FOR RESIDUE IMD F 1014
22
CC4
SOFTWARE
LYS C:82 , MET C:83 , HOH C:2225 , ASN D:35 , ILE D:81
BINDING SITE FOR RESIDUE IMD C 1015
23
CC5
SOFTWARE
GLN E:73 , ASN E:79 , IMD E:1000 , LEU G:23 , MET G:24 , GLU G:28
BINDING SITE FOR RESIDUE IMD G 1016
24
CC6
SOFTWARE
HOH A:2212
BINDING SITE FOR RESIDUE IMD C 1017
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1ugia_ (A:)
1b: SCOP_d1ugib_ (B:)
1c: SCOP_d1ugic_ (C:)
1d: SCOP_d1ugid_ (D:)
1e: SCOP_d1ugie_ (E:)
1f: SCOP_d1ugif_ (F:)
1g: SCOP_d1ugig_ (G:)
1h: SCOP_d1ugih_ (H:)
View:
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Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Cystatin-like
(403)
Superfamily
:
Uracil-DNA glycosylase inhibitor protein
(11)
Family
:
Uracil-DNA glycosylase inhibitor protein
(11)
Protein domain
:
Uracil-DNA glycosylase inhibitor protein
(11)
Bacteriophage pbs2 [TaxId: 10684]
(10)
1a
d1ugia_
A:
1b
d1ugib_
B:
1c
d1ugic_
C:
1d
d1ugid_
D:
1e
d1ugie_
E:
1f
d1ugif_
F:
1g
d1ugig_
G:
1h
d1ugih_
H:
[
close SCOP info
]
CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1ugiD00 (D:3-84)
1b: CATH_1ugiA00 (A:2-84)
1c: CATH_1ugiB00 (B:2-84)
1d: CATH_1ugiC00 (C:2-84)
1e: CATH_1ugiE00 (E:2-84)
1f: CATH_1ugiF00 (F:2-84)
1g: CATH_1ugiG00 (G:2-84)
1h: CATH_1ugiH00 (H:2-84)
View:
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(
)
(
)
Architectures
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(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Nuclear Transport Factor 2; Chain: A,
(517)
Homologous Superfamily
:
[code=3.10.450.20, no name defined]
(11)
Bacillus phage pbs2. Organism_taxid: 10684.
(2)
1a
1ugiD00
D:3-84
1b
1ugiA00
A:2-84
1c
1ugiB00
B:2-84
1d
1ugiC00
C:2-84
1e
1ugiE00
E:2-84
1f
1ugiF00
F:2-84
1g
1ugiG00
G:2-84
1h
1ugiH00
H:2-84
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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Atom Selection
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Solvent
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
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Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Asymmetric Unit 1
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Asym.Unit (129 KB)
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