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1UG6
Asym. Unit
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Asym.Unit (162 KB)
Biol.Unit 1 (157 KB)
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(1)
Title
:
STRUCTURE OF BETA-GLUCOSIDASE AT ATOMIC RESOLUTION FROM THERMUS THERMOPHILUS HB8
Authors
:
N. K. Lokanath, I. Shiromizu, M. Miyano, S. Yokoyama, S. Kuramitsu, N. K Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
12 Jun 03 (Deposition) - 24 Jun 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
0.99
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Glucosidase, Atomic Resolution, Riken Structural Genomics/Proteomics Initiative, Rsgi, Structural Genomics, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. K. Lokanath, I. Shiromizu, M. Miyano, S. Yokoyama, S. Kuramitsu, N. Kunishima
Structure Of Beta-Glucosidase At Atomic Resolution From Thermus Thermophilus Hb8
To Be Published
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
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No.
Name
Count
Type
Full Name
1
GOL
4
Ligand/Ion
GLYCEROL
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Sites
(4, 4)
Info
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1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:39 , GLY A:181 , ARG A:183 , VAL A:330 , PRO A:333 , ASP A:378
BINDING SITE FOR RESIDUE GOL A 901
2
AC2
SOFTWARE
HIS A:178 , TRP A:312 , GLU A:392 , PHE A:395 , HOH A:924 , HOH A:1334 , HOH A:1420
BINDING SITE FOR RESIDUE GOL A 902
3
AC3
SOFTWARE
GLN A:18 , HIS A:119 , ASN A:163 , GLU A:164 , GLU A:338 , TRP A:385 , GLU A:392 , TRP A:393
BINDING SITE FOR RESIDUE GOL A 903
4
AC4
SOFTWARE
LEU A:182 , ASN A:184 , ARG A:373 , GLY A:376 , VAL A:377 , ASP A:378 , HOH A:933 , HOH A:945 , HOH A:1090 , HOH A:1266
BINDING SITE FOR RESIDUE GOL A 904
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SAPs(SNPs)/Variants
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1ug6a_ (A:)
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Protein Domains
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Organisms
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(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
Family 1 of glycosyl hydrolase
(102)
Protein domain
:
Beta-glucosidase A
(21)
Thermus thermophilus [TaxId: 274]
(1)
1a
d1ug6a_
A:
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CATH Domains
(1, 1)
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all CATH domains
1a: CATH_1ug6A00 (A:4-429)
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)
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Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Glycosidases
(843)
Thermus thermophilus. Organism_taxid: 274.
(3)
1a
1ug6A00
A:4-429
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Pfam Domains
(1, 1)
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all PFAM domains
1a: PFAM_Glyco_hydro_1_1ug6A01 (A:4-429)
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Clan
:
Glyco_hydro_tim
(488)
Family
:
Glyco_hydro_1
(36)
Thermus thermophilus
(1)
1a
Glyco_hydro_1-1ug6A01
A:4-429
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