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1UFW
Asym. Unit
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Asym.Unit (468 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF RNP DOMAIN IN SYNAPTOJANIN 2
Authors
:
F. He, Y. Muto, R. Ushikoshi, M. Shirouzu, T. Terada, T. Kigawa, M. Inoue, T. Yabuki, M. Aoki, E. Seki, T. Matsuda, H. Hirota, M. Yoshida N. Kobayashi, A. Tanaka, T. Osanai, Y. Matsuo, O. Ohara, T. Nagase, R. Kikuno, M. Nakayama, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
10 Jun 03 (Deposition) - 10 Dec 03 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Nmr, Rnp Domain, Synaptojanin 2, Structural Genomics, Riken Structural Genomics/Proteomics Initiative, Rsgi, Rna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. He, Y. Muto, R. Ushikoshi, M. Shirouzu, T. Terada, T. Kigawa, M. Inoue, T. Yabuki, M. Aoki, E. Seki, T. Matsuda, H. Hirota, M. Yoshida, N. Kobayashi, A. Tanaka, T. Osanai, Y. Matsuo, O. Ohara, T. Nagase, R. Kikuno, M. Nakayama, S. Yokoyama
Solution Structure Of Rnp Domain In Synaptojanin 2
To Be Published
(for further references see the
PDB file header
)
[
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available in "Model" view)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: RRM (A:15-89)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RRM
PS50102
Eukaryotic RNA Recognition Motif (RRM) profile.
SYNJ2_HUMAN
889-968
1
A:15-89
[
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Exons
(5, 5)
Info
All Exons
Exon 1.18 (A:1-4)
Exon 1.20b (A:5-7)
Exon 1.21 (A:8-55)
Exon 1.22 (A:55-81)
Exon 1.23 (A:82-95 (gaps))
View:
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All Exon Boundaries
1: Boundary 1.17/1.18
2: Boundary 1.18/1.19
3: Boundary 1.19/1.20b
4: Boundary 1.20b/1.21
5: Boundary 1.21/1.22
6: Boundary 1.22/1.23
7: Boundary 1.23/1.24
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000355585
1a
ENSE00001204730
chr6:
158402919-158403120
202
SYNJ2_HUMAN
1-43
43
0
-
-
1.2
ENST00000355585
2
ENSE00001204724
chr6:
158438236-158438322
87
SYNJ2_HUMAN
43-72
30
0
-
-
1.4b
ENST00000355585
4b
ENSE00001760278
chr6:
158449788-158450058
271
SYNJ2_HUMAN
72-162
91
0
-
-
1.6a
ENST00000355585
6a
ENSE00000894238
chr6:
158454487-158454712
226
SYNJ2_HUMAN
162-237
76
0
-
-
1.7
ENST00000355585
7
ENSE00002152303
chr6:
158464348-158464431
84
SYNJ2_HUMAN
238-265
28
0
-
-
1.8
ENST00000355585
8
ENSE00002180718
chr6:
158475999-158476060
62
SYNJ2_HUMAN
266-286
21
0
-
-
1.9a
ENST00000355585
9a
ENSE00000765575
chr6:
158480289-158480385
97
SYNJ2_HUMAN
286-318
33
0
-
-
1.10a
ENST00000355585
10a
ENSE00000765574
chr6:
158483024-158483196
173
SYNJ2_HUMAN
319-376
58
0
-
-
1.11
ENST00000355585
11
ENSE00002198074
chr6:
158484823-158484904
82
SYNJ2_HUMAN
376-403
28
0
-
-
1.12
ENST00000355585
12
ENSE00000830232
chr6:
158485633-158485782
150
SYNJ2_HUMAN
404-453
50
0
-
-
1.13
ENST00000355585
13
ENSE00000830230
chr6:
158485858-158486023
166
SYNJ2_HUMAN
454-509
56
0
-
-
1.14a
ENST00000355585
14a
ENSE00000765569
chr6:
158487476-158487667
192
SYNJ2_HUMAN
509-573
65
0
-
-
1.15
ENST00000355585
15
ENSE00000830228
chr6:
158489679-158489760
82
SYNJ2_HUMAN
573-600
28
0
-
-
1.16
ENST00000355585
16
ENSE00000830227
chr6:
158490565-158490705
141
SYNJ2_HUMAN
600-647
48
0
-
-
1.17
ENST00000355585
17
ENSE00000830226
chr6:
158492634-158492826
193
SYNJ2_HUMAN
647-711
65
0
-
-
1.18
ENST00000355585
18
ENSE00000894235
chr6:
158495612-158495770
159
SYNJ2_HUMAN
712-764
53
1
A:1-4
4
1.19
ENST00000355585
19
ENSE00000765564
chr6:
158497658-158497814
157
SYNJ2_HUMAN
765-817
53
0
-
-
1.20b
ENST00000355585
20b
ENSE00001217886
chr6:
158499196-158499313
118
SYNJ2_HUMAN
817-856
40
1
A:5-7
3
1.21
ENST00000355585
21
ENSE00002145380
chr6:
158502141-158502359
219
SYNJ2_HUMAN
856-929
74
1
A:8-55
48
1.22
ENST00000355585
22
ENSE00000830220
chr6:
158502464-158502542
79
SYNJ2_HUMAN
929-955
27
1
A:55-81
27
1.23
ENST00000355585
23
ENSE00000765560
chr6:
158504461-158504629
169
SYNJ2_HUMAN
956-1012
57
1
A:82-95 (gaps)
38
1.24
ENST00000355585
24
ENSE00000765559
chr6:
158505033-158505206
174
SYNJ2_HUMAN
1012-1070
59
0
-
-
1.25
ENST00000355585
25
ENSE00000765558
chr6:
158507887-158508021
135
SYNJ2_HUMAN
1070-1115
46
0
-
-
1.26
ENST00000355585
26
ENSE00000765557
chr6:
158509692-158509804
113
SYNJ2_HUMAN
1115-1152
38
0
-
-
1.27
ENST00000355585
27
ENSE00000412332
chr6:
158510871-158510979
109
SYNJ2_HUMAN
1153-1189
37
0
-
-
1.28
ENST00000355585
28
ENSE00000894234
chr6:
158513958-158514136
179
SYNJ2_HUMAN
1189-1248
60
0
-
-
1.30c
ENST00000355585
30c
ENSE00001890001
chr6:
158516650-158520208
3559
SYNJ2_HUMAN
1249-1496
248
0
-
-
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1ufwa_ (A:)
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Protein Domains
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(
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Organisms
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)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
RNA-binding domain, RBD
(289)
Family
:
Canonical RBD
(214)
Protein domain
:
Synaptojanin 2
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1ufwa_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1ufwA00 (A:1-95)
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.330, no name defined]
(307)
Human (Homo sapiens)
(81)
1a
1ufwA00
A:1-95
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_DUF1866_1ufwA01 (A:8-89)
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Clans
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Clan
:
RRM
(206)
Family
:
DUF1866
(1)
Homo sapiens (Human)
(1)
1a
DUF1866-1ufwA01
A:8-89
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